Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1556 ATGTTTAATTCATCCGATCAATCCGGCCGCCGTATTCTGTCATTCCCGGCGGTTCATCCCTGCGAAGGCGTGTCTCCGGCGACCCTTCTCTCTTCTCTGATCTCTCTTTCTCAGGCTATATGCAGTTTTCAATCCAAGTTCTTCCCAACTCAACGTCGAAATTCGAGAGAAATAATTCGCCAACTCGGTATCATCCTCCTCTTCCTCGAGGAAATTCGAGACCGCGGTGTTCCGATAAGCGACTCTGTTTCTCTCTGCTTCTCCGAACTTCACCTCTGTCTCCAGAAAATTCACTTCTTACTCTCAGATTGTACTCGTGAAGGTGCTCGGCTATGGCTGCTAATGAAATCGGAACACGTCGCCACTCAATTCAGGGTTCTGACTCGCGCGTTGGCCACTGCTCTTGACGTTTTACCTCTGGGAAGCATCGAGATTTGTGACGAAGTGAAAGAGGTAGTTGAATTAGTAGCCAAGCAAGCTCAAAAGGTAAAGGTTGAACTAGACCCACACGATGAACTCGCCACCAAGCAAGTCCTTTCAGTTTTGTATCAGTTTGAGAGAGGAATGGAACCCAACTTGATGAGTATCATGAAGCGAACATTGAACTACTTGGGAATCAAAAATTGGAATGATTGCAACAAAGAGGTTAAATTCTTGGAAGATGAAGTCAACTTCAAGTGCTCTGAAGGTGGCGAGAGGGAAGTCCCATTTCTGAGTAGTTTAGTTGGGTATTTATGTTATTGCAGGGTAGTGATATTTGAAACACTGGATTTTCATCAAACCGCCGCCACGGACCCGTCAGAGACAAGGTGTAGCACGGAGATGATTAACTTCATAAACCCACATGACTTCCGATGTCCGATCTCTTTACAACTAATGACCGATCCTGTGACTGTATCAACGGGACAGACGTACGATCGATCATCCATTCAGAAATGGCTCAAAGCTGGAAACAGGACATGCCCGAAAACAGGGGAAAAGCTAACAAACACAGAGCTCGTCCCAAACACAGCCCTCAGAAAGCTAATCCACCAATTCTGTTCTGAAAACGGAGTTTCCGCCTCCGGCGCCAAGCCCGGTCACCGGAGTCGTGACATAACGAGAACCATTGTCCCAGGAAGTACAGCTTCAGCACATGCCATGCAATTTCTCTCGTGGTTCATTGCCAGGAGGCTTGTGTTCGGAACAGAGGAGCAGAAAAACAAAGCAGCTTACGAAATTCGTGTGCTTGCAAGATCCAACATTTTCAACAGAACATGTTTGATTGAAGTTGGAACAGTTCCTTCGTTGCTCAATCTCTTGGATACGGACGATAAATCAATGCAAGAGAACGCAATCTCTGCTCTTCTGAAACTGGCAAAGCATAAAAACGGACAAACAACTATAATGGAAAGTGAAGGATTAAAACCAGTCCTTGTGGTTCTTAAGAATGGAATTTCTTTAGAAGCTCGTCAAACCGCAGCTGCGATAATATTCTATCTTTCTTCCACGAGAGAGAACAGGAAAGTAATCGGAGAAAACCCAGAAGCAATCCCTGCTTTGGTAGAACTAATCAAGGAAGAAACAACAGCATTTGGGAAAAAGAACGCAATAGTTGCCATTTTCGGGCTTCTCTTGCTTCCTCAGAATCATCAGAAAGTGATTGAAGCCAATACTATTCCGGCGCTGGTTTGTATCTTAGCTTCGTCGTCGGAAAAGTCCGACCTGATCACAGATTGTTTAGCGGTTCTTGCGGCGTTGGCGGAGAACGAGGAGGGAGCAAAAGCTGTGTCAAAAGCTTGTGGTTTGTCATTGATCGTTGGAATGTTACAGATGGTGAAATGGAAGACAGGGAAAGAACACTGTGTGGCAATTTTGATGTCGCTGTGTGTTCATGTCGGAGAAGAAGTGGTGGCTGTTCTGGCGAAAGATCCGACGTTGATGCCGTGGCTTTACTCACTGCTCACCGACGGAACTTCTCATGCGGCTAAGAAGGCTCGTTCTCTCATCAAACTTCTTCATGAATTCAATGACACTAGAGCTTCCCAGTGGGTTACTTCTTCGGTCGTGCCACAACGACCCCTTCACATACGATATGAAGCCAAGCATAACCGTCACGCGAATCACTGTCTTCTCCCGTATTGTGAGGTAATTGAATTCTGCAGTCTCACTTCTCGAATACTTCACTCTGCTTTAGCTATGGCGACCGAAACAAAGCAACCTACCACTGAAGACGTCAAGATTGATCTCTTCGAAGACGACGATGAGTTTGAGGAGTTCGAAATCAATGAAGAATGGGATGAGGAGGAGGAAGAGAAGGAAGTGAACCAGCAGTGGGAAGATGATTGGGATGACGATGATGTTAGTGATGATTTTTCTCTTCAGCTGAGGAAGGAGCTGGAAAGCAATGCTGAGAATGAAAAGAAGTAA 2409 0.457 MFNSSDQSGRRILSFPAVHPCEGVSPATLLSSLISLSQAICSFQSKFFPTQRRNSREIIRQLGIILLFLEEIRDRGVPISDSVSLCFSELHLCLQKIHFLLSDCTREGARLWLLMKSEHVATQFRVLTRALATALDVLPLGSIEICDEVKEVVELVAKQAQKVKVELDPHDELATKQVLSVLYQFERGMEPNLMSIMKRTLNYLGIKNWNDCNKEVKFLEDEVNFKCSEGGEREVPFLSSLVGYLCYCRVVIFETLDFHQTAATDPSETRCSTEMINFINPHDFRCPISLQLMTDPVTVSTGQTYDRSSIQKWLKAGNRTCPKTGEKLTNTELVPNTALRKLIHQFCSENGVSASGAKPGHRSRDITRTIVPGSTASAHAMQFLSWFIARRLVFGTEEQKNKAAYEIRVLARSNIFNRTCLIEVGTVPSLLNLLDTDDKSMQENAISALLKLAKHKNGQTTIMESEGLKPVLVVLKNGISLEARQTAAAIIFYLSSTRENRKVIGENPEAIPALVELIKEETTAFGKKNAIVAIFGLLLLPQNHQKVIEANTIPALVCILASSSEKSDLITDCLAVLAALAENEEGAKAVSKACGLSLIVGMLQMVKWKTGKEHCVAILMSLCVHVGEEVVAVLAKDPTLMPWLYSLLTDGTSHAAKKARSLIKLLHEFNDTRASQWVTSSVVPQRPLHIRYEAKHNRHANHCLLPYCEVIEFCSLTSRILHSALAMATETKQPTTEDVKIDLFEDDDEFEEFEINEEWDEEEEEKEVNQQWEDDWDDDDVSDDFSLQLRKELESNAENEKK 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1556 802 Pfam Armadillo/beta-catenin-like repeat 417 453 IPR000225 GO:0005515
Alju13g1556 802 Gene3D - 531 685 IPR011989 -
Alju13g1556 802 FunFam RING-type E3 ubiquitin transferase 362 677 - -
Alju13g1556 802 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 551 595 IPR000225 GO:0005515
Alju13g1556 802 Gene3D - 388 530 IPR011989 -
Alju13g1556 802 PANTHER U BOX DOMAIN-CONTAINING 78 670 - -
Alju13g1556 802 SMART arm_5 540 582 IPR000225 GO:0005515
Alju13g1556 802 SMART arm_5 456 496 IPR000225 GO:0005515
Alju13g1556 802 SMART arm_5 413 454 IPR000225 GO:0005515
Alju13g1556 802 MobiDBLite consensus disorder prediction 754 782 - -
Alju13g1556 802 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 425 467 IPR000225 GO:0005515
Alju13g1556 802 FunFam RING-type E3 ubiquitin transferase 279 354 - -
Alju13g1556 802 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 354 IPR013083 -
Alju13g1556 802 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Alju13g1556 802 Pfam DSS1/SEM1 family 737 794 IPR007834 GO:0006406|GO:0008541|GO:0043248
Alju13g1556 802 SMART DSS1_SEM1_2 736 795 IPR007834 GO:0006406|GO:0008541|GO:0043248
Alju13g1556 802 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Alju13g1556 802 SUPERFAMILY RING/U-box 281 353 - -
Alju13g1556 802 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Alju13g1556 802 CDD RING-Ubox_PUB 281 333 IPR045210 -
Alju13g1556 802 SUPERFAMILY ARM repeat 396 667 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1556 Alju-ChrAlju13 33825782 33832124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1556 1 675 U-box Gene Family AT1G60190 39.124 9.57e-165 491