LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju13g1551	ATGTCACAACTCAGATCATCCAAACCCCACCACCATAAAGAAAGAAACTTTTCACTGTATAGCCAAATGGGTCCAAATCCAAATCCTATTTGGGTACTCTTCATGGTTGTGGTGTTTTCGTTTCTTCTTCCAATGGCTTATACAGAGGATGAAGAAGTGAAGCAGGCAATGGTGAGATTCATGGAGAAACTTGAACCAAAGAATACACCAACAGATATGAACTGGGGTTGGAACTCATCTTCAGATCCTTGCATTGACGATTGGTATGGAGTTCAGTGTTATTCAGGAAACAAATTTGTGAAGAATATAGTTCTTGAGGATTCTAGTTTCACGGGGACTTTAGACGCAGCTTCTCTCTGCACATTACAGCTTCTTCAAGGTCTTAGCTTGAAGAACAACAACTTACACGGCTTAATACCAGAAGAAATAGGAATGTGCAAAGCATTGGGTCTTTTGTATTTAAGTGGCAACAATTTCTCCGGTGACCTTCCTCTCTCTGTTTCACTCTTGGGTAATCTGAAAAGGATCGATGTTTCAGATAACAATTTCTCTGGAGACCTTCCTGATATGAGTCATATTACAGGGTTGATATCATTTCGAGCCCAGAATAATGAATTCACAGGGGAAATTCCAAACTTTGTCTTCTCCAACCTGCAAGATCTCAATATCTCCAACAACAATTTACAAGGTCCTGTTCCTGATCAGATAATCTTGTTTGGAGCAGACAGCTTTTCTGGTAATCCAACCTTATGTGGGCCCCCACTTGAAAATTCTTGTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTGCAACAGAGAACAAGAAAACCAGAAAATCTTTCAATCGTAGCTTGGCCATTTATTCTGGGTACGTGATTCTTGCTCTGCTTGTCCTGCTTTACTTGGCATTCAAGATTGTTAAGCGTTACAGAGCAAGGAAGGAGCCATTGAATGCTGAGAAGAAGGAAGAAACAGAGGAAGCTCGCAAAGAAAAGACTTTAGAATCTCCCAGTGAAGTGAATGGTGGGACTGTAACAAGATCAGAGTATTCAGTGTCATCTATTGAAACAGGGATGGTTTCATCAAATCTGGTTGTTCTTACGAGTCCGGTGGTGAGGACACTGCGATTCGAGGACTTGCTAAGAGCTCCTGCAGAATTAGTAGGCAGAGGAAAGCATGGAAGCATGTACAAGGTGATGCTGGAAAGCGGGGTGGTTTTAGCAGTGAAGAGAATCAAAGATTTAGGGATCTCGAAACAGGATTTTGATAAGAGAATGCACAAGTTGAACCAAGTGAAGCATCCTTGTGTACTCCCTCTTCTTGCATTTTATTGCTCCCTGCAAGAAAAGCTTTTGGTGTATGAATTTCTGCATAATGGTAGCCTCTTCAAGATGCTACGTGGATCTCAAAGTGGCAAAACATTTGACTGGGGAAGCAGACTGAATGTTGCAGCCAACATAGCTGAAGCTTTAGCCTACATGCACGAGGAGCTTCGAGAAAGTGGGATAGCTCATGGAAACATAAAATCCAGCAACATATTTTTCGACAAGAACATGGATCCATGCTTAAGCGAATATGGATTAATGGTGGTTGCGAATCAAGAAAGATCTGTTTTTTATGGAGGCCAAAGCAGCAGCATCAAGAACAACAACAGCAGAAATCCCAGTGAAGTTTATAGCACCTTCAAGGTGGACACGTATGCATTTGGGGTTGTGCTTCTTGAACTTTTGACAGGAAAAGTGGTTCAGAACAATAATAATGGGTTTGATCTGGTTCGGTGGGTTAACTCAGTGGTGAGAGAAGAATGGACGGTGGAGGTATTTGACAAGTGTTTGATGACAGAAGAAGGTAATAATAATGAAGAGAGGATGATGAGTTTGTTGCAAGTAGCTTTGAAGTGTGTGAGTAAGAATCCAAATGAGAGGCCAAGTATGAGTGAAGTTGCAGTAATGACCATTTCTTTGAAGGAGGAACAAGACAGATCCATAACCTTCAATTCCTAA	2007	0.418	MSQLRSSKPHHHKERNFSLYSQMGPNPNPIWVLFMVVVFSFLLPMAYTEDEEVKQAMVRFMEKLEPKNTPTDMNWGWNSSSDPCIDDWYGVQCYSGNKFVKNIVLEDSSFTGTLDAASLCTLQLLQGLSLKNNNLHGLIPEEIGMCKALGLLYLSGNNFSGDLPLSVSLLGNLKRIDVSDNNFSGDLPDMSHITGLISFRAQNNEFTGEIPNFVFSNLQDLNISNNNLQGPVPDQIILFGADSFSGNPTLCGPPLENSCPPPPPPPLPPPPATENKKTRKSFNRSLAIYSGYVILALLVLLYLAFKIVKRYRARKEPLNAEKKEETEEARKEKTLESPSEVNGGTVTRSEYSVSSIETGMVSSNLVVLTSPVVRTLRFEDLLRAPAELVGRGKHGSMYKVMLESGVVLAVKRIKDLGISKQDFDKRMHKLNQVKHPCVLPLLAFYCSLQEKLLVYEFLHNGSLFKMLRGSQSGKTFDWGSRLNVAANIAEALAYMHEELRESGIAHGNIKSSNIFFDKNMDPCLSEYGLMVVANQERSVFYGGQSSSIKNNNSRNPSEVYSTFKVDTYAFGVVLLELLTGKVVQNNNNGFDLVRWVNSVVREEWTVEVFDKCLMTEEGNNNEERMMSLLQVALKCVSKNPNERPSMSEVAVMTISLKEEQDRSITFNS	668

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju13g1551	668	MobiDBLite	consensus disorder prediction	254	273	-	-
	Alju13g1551	668	PANTHER	OS05G0588300 PROTEIN	32	657	-	-
	Alju13g1551	668	ProSiteProfiles	Protein kinase domain profile.	383	656	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju13g1551	668	Pfam	Protein kinase domain	387	649	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju13g1551	668	Gene3D	Ribonuclease Inhibitor	215	261	IPR032675	-
	Alju13g1551	668	MobiDBLite	consensus disorder prediction	319	346	-	-
	Alju13g1551	668	SUPERFAMILY	L domain-like	75	255	-	-
	Alju13g1551	668	Gene3D	Transferase(Phosphotransferase) domain 1	458	667	-	-
	Alju13g1551	668	FunFam	Nuclear pore complex protein NUP107	50	212	-	-
	Alju13g1551	668	Gene3D	Ribonuclease Inhibitor	52	214	IPR032675	-
	Alju13g1551	668	SUPERFAMILY	Protein kinase-like (PK-like)	386	652	IPR011009	-
	Alju13g1551	668	MobiDBLite	consensus disorder prediction	319	337	-	-
	Alju13g1551	668	Coils	Coil	308	328	-	-
	Alju13g1551	668	Gene3D	Phosphorylase Kinase; domain 1	358	457	-	-
	Alju13g1551	668	MobiDBLite	consensus disorder prediction	250	278	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju13g1551	Alju-ChrAlju13	33786946	33789277	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju13g1551	77	649	Receptor kinase-like Gene Family	AT1G68400	36.230	4.75e-99	316

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-III	Alju13g1551		Pkinase	2.9e-26	CL0016