Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1544 ATGGCAACATTTGCAGGGACCACCCAGAAATGTAAGGCCTGTGAGAAGACAGTTTATTTGGTTGATCAGCTTACTGCTGACGATAAAATTTACCACAGATTTTGCTTCAGATGTCACCACTGCAAGGGAACCCTCAAGCTGAGTAATTATTGTTCCTTTGAGGGTGTTTTATACTGCAAGCCTCATTATGATCAACTCTTGAAGAAGACTGGAAGCTTAGAAAAAAGTTTTGAAGGTATTCCAAGAACTGCTAGAGTTGTCAGGTCTGCTGATCAGGTACAAGGCAATGGCAAGGTTTCTAGATTATTTGTAGGAACTCAGGAAAAGTGTGTTGCTTGCAAGAAGACAGTCTACCCAATTGAAAAGGTGGCCGTTGACGGAAAATCTTACCACAAGATTTGTTTCAGATGCTCCCATGGAGGCTGTGTCATCAGCCCCTCAAACTATGTGGCCCATGAACACCGTCTCTACTGTAGACACCACCATACTCAGCTCTTCAAGCAGAAGGGTAACTTCAGTCAACTTGACCGCCATGAAAATGATGAAAAAAAGCATGAAAACGAAATGAAACATGAAAATGAAAATGGAAATGGAAATGTTCAGGTCGTCACTGAGAACACAACAACTGAGTAG 633 0.4202 MATFAGTTQKCKACEKTVYLVDQLTADDKIYHRFCFRCHHCKGTLKLSNYCSFEGVLYCKPHYDQLLKKTGSLEKSFEGIPRTARVVRSADQVQGNGKVSRLFVGTQEKCVACKKTVYPIEKVAVDGKSYHKICFRCSHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQLDRHENDEKKHENEMKHENENGNGNVQVVTENTTTE 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1544 210 CDD LIM1_SF3 7 69 - -
Alju13g1544 210 Gene3D Cysteine Rich Protein 5 75 - -
Alju13g1544 210 Gene3D Cysteine Rich Protein 104 174 - -
Alju13g1544 210 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 174 - -
Alju13g1544 210 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Alju13g1544 210 MobiDBLite consensus disorder prediction 194 210 - -
Alju13g1544 210 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Alju13g1544 210 MobiDBLite consensus disorder prediction 171 210 - -
Alju13g1544 210 FunFam LIM domain and actin-binding 1 5 75 - -
Alju13g1544 210 FunFam LIM domain and actin-binding 1 104 174 - -
Alju13g1544 210 Coils Coil 175 195 - -
Alju13g1544 210 PANTHER OS06G0237300 PROTEIN 4 93 - -
Alju13g1544 210 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Alju13g1544 210 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Alju13g1544 210 MobiDBLite consensus disorder prediction 172 193 - -
Alju13g1544 210 Pfam LIM domain 11 64 IPR001781 -
Alju13g1544 210 Pfam LIM domain 110 165 IPR001781 -
Alju13g1544 210 CDD LIM2_SF3 110 170 - -
Alju13g1544 210 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Alju13g1544 210 SMART lim_4 109 161 IPR001781 -
Alju13g1544 210 SMART lim_4 10 62 IPR001781 -
Alju13g1544 210 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1544 Alju-ChrAlju13 33723130 33725149 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Alju13g1544 LIM 2.1e-10 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g2594 06 52968362 52970801 Alju13g1544 13 33723130 33725149 CCT
Alju13g1544 13 33723130 33725149 Alju13g1544 13 33723130 33725149 ECH