Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1541 ATGGGCGGCAATGGCAGACCCAGGTGGAAAATCTCTTTCCATCGTAATTCCTCAAGCTCCAAGCTCCAACCAAAAGATCCTCCCGTCGAGTTTCTGTGCCCAATTTCTGGGTCTCTCATAGCCGAACCCGTCGTCGTTGCTTCCGGTCAGACTTTTGAATCGGTTTCTGTTCAAGTGTGCAGAGACCTAGGTTTCACTCCCAAGCTAGAAGACGGATCCACTCCTGATTTCTCCGCTGTGATTCCAAATTTGGCTCTCAAATCCACGATATCCAATTGGTGCGTTAAATCTGGTGTGGAGAAACCTCGCCCGCCGGAATATAGCTCCGTGGAGAGGCTCGTCCGTACATCAATGGTGTCCCCGCCGCGCGAGAATCAAGAGTCGGAATTAAGGGTTTCGGATAGGGAATTGCTCAAGGTCGTACTGGATAATCCACCCGTCATTTTCTCTCACGCAGCCACGGAGTTGGGTCCTCGGGTCAACCCGTTCCAAACAAGTTCATCCGACTCCGTGGGCTGTCCCGAGACTCCTTTACCTCTAGCTACTCGTCCCACCTGTTACTCTTCTTCGTCTTCTTCTGTCGAAATCAATGAGAATGACCCTATTGGTCCAATTTCCCAGGAAGAGGAGAAATTAGTGTTGAGGCTGAGGAGCGACGAAGCTTCTGAGCAGGAAGAAGCAGTTGTTTCTCTAAGGAACGTCACCAAGACAAGAGAAGACACTAGAATTTCTCTTTGCACGCCTGCGTTACTCTCATCACTCCGATCATTGATCCCATCGGAGCATCCCGTAGTGCAAGTAAACGCCGTCGCCTCACTGGTTAATTTCTCCCTCGAAAAATCTAACAAAGTGAAAATCGTAAGGTCTGGATTTATCCCTTCCCTCATTTTAGTCTTGAAAAAAGGATTTCCCGAGGCGCAGGAACACGCGGCGGGAGCACTATTCAGCTTGGCCTTAGACGACGATAACAAAATGGCCATCGGCGTTTTGGGCGCGTTGGAGCCACTCATGAACGCGTTGAGGTCCGAGTCGGAACGGACTCGGCACGACTCGGCGCTCGCGTTGTACCACCTGACCTTGGTCCAGAGCAACAGGGTGAAGCTGGTGAAGCTCGGGGTGGTGCCGACGCTGCTATCAATGGTGACATCGGGGGATTTGGCGAGCCGTGTTTTGCTGATTCTGTGTAATATTGCGGCGGGCACGGAGGGGCGAACGGCGATGCTGGATGCGAATGCGGTGGAGTGCTTGGTGGGTGTACTGAGGGAGAATAAAAGGGCGGCGGAGGCGACGACAGAACACTGTGTGGCGGCGTTGTACGGAATGAGCTATGGAAGCTTGAGGTTCAAAGCGTTGGCAAAGGAAGCAAGAGCTGTGGAAGTGTTGAGAGAGGTTGAAGAGAGAGGATCAGGGAGGGCGCGAGAGAAGGCCAAGAGGATGTTGGAGATGATGAGAGCCGGAGGAGAAGAGGATGACGAAAACGGCGGCGGTTCTGATGGGGCATTGGACTCGGGTGGGTTGGGTCGAACCCGGTTCAGAGTTGGTGGCGGGAGGAATGTGAACGCAGCTAACACCACCACGTTTTAG 1584 0.5297 MGGNGRPRWKISFHRNSSSSKLQPKDPPVEFLCPISGSLIAEPVVVASGQTFESVSVQVCRDLGFTPKLEDGSTPDFSAVIPNLALKSTISNWCVKSGVEKPRPPEYSSVERLVRTSMVSPPRENQESELRVSDRELLKVVLDNPPVIFSHAATELGPRVNPFQTSSSDSVGCPETPLPLATRPTCYSSSSSSVEINENDPIGPISQEEEKLVLRLRSDEASEQEEAVVSLRNVTKTREDTRISLCTPALLSSLRSLIPSEHPVVQVNAVASLVNFSLEKSNKVKIVRSGFIPSLILVLKKGFPEAQEHAAGALFSLALDDDNKMAIGVLGALEPLMNALRSESERTRHDSALALYHLTLVQSNRVKLVKLGVVPTLLSMVTSGDLASRVLLILCNIAAGTEGRTAMLDANAVECLVGVLRENKRAAEATTEHCVAALYGMSYGSLRFKALAKEARAVEVLREVEERGSGRAREKAKRMLEMMRAGGEEDDENGGGSDGALDSGGLGRTRFRVGGGRNVNAANTTTF 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1541 527 FunFam RING-type E3 ubiquitin transferase 207 483 - -
Alju13g1541 527 SUPERFAMILY ARM repeat 211 478 IPR016024 -
Alju13g1541 527 Gene3D - 206 482 IPR011989 -
Alju13g1541 527 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 290 327 IPR000225 GO:0005515
Alju13g1541 527 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 103 IPR013083 -
Alju13g1541 527 ProSiteProfiles U-box domain profile. 26 100 IPR003613 GO:0004842|GO:0016567
Alju13g1541 527 MobiDBLite consensus disorder prediction 485 527 - -
Alju13g1541 527 SUPERFAMILY RING/U-box 16 103 - -
Alju13g1541 527 MobiDBLite consensus disorder prediction 1 26 - -
Alju13g1541 527 PANTHER U BOX DOMAIN-CONTAINING 23 484 - -
Alju13g1541 527 Pfam Armadillo/beta-catenin-like repeat 320 359 IPR000225 GO:0005515
Alju13g1541 527 Pfam U-box domain 28 95 IPR003613 GO:0004842|GO:0016567
Alju13g1541 527 SMART Ubox_2 30 93 IPR003613 GO:0004842|GO:0016567
Alju13g1541 527 SMART arm_5 400 443 IPR000225 GO:0005515
Alju13g1541 527 SMART arm_5 279 319 IPR000225 GO:0005515
Alju13g1541 527 SMART arm_5 320 360 IPR000225 GO:0005515
Alju13g1541 527 SMART arm_5 361 399 IPR000225 GO:0005515
Alju13g1541 527 FunFam RING-type E3 ubiquitin transferase 9 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1541 Alju-ChrAlju13 33694202 33695785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1541 1 527 U-box Gene Family AT5G65200 54.189 0.0 536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju13g1541 13 33694202 33695785 Alju13g1541 13 33694202 33695785 ECH