Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1519 ATGTCTCACAAGCGTGCCACCGCCGATTCTGCTATAAGCGCCGATGGTGATGGTTCCGCCGGAGAGATCATGCTGTTTGGAGTTCGAGTTGTGGTCGATTCCATGAGGAAGAGCGTGAGTATGAATAATCTCTCTCAGTACGAGCATCCTCAGGACGCTCCAAACAGTAATAACGGCAACAAGGAAGATTCTCTGGCTGCCGGCTATGCCTCCGCCGATGAAGCTGCTGCTCATAATTCTGGCAGGCATCGCGAGCGTGAGCGTAAGCGAGGAGTTCCGTGGACAGAGGAAGAGCACAAGCTGTTCTTGCTGGGATTGCAGAAAGTTGGTAAAGGTGATTGGAGAGGGATCTCAAGGAACTACGTGAAAACTCGGACGCCTACACAGGTTGCGAGCCATGCTCAAAAGTACTTTCTCCGGCGAAGCAACCTCAATCGCCGGCGCCGTAGATCCAGCCTTTTTGATATCACCACCGACACGGTCTCTGCAATCCCAATTGAAGAACAGATCCAGCATCAAGATTATATGTCTCATTCAAATCCTGTGTGCCCTGTAACCCCTGAAACTACCAACATAAATGGATTTGCAATGATGCCAGTATATCCTATGAATATTGTTGGTTCTGGAATGATTTCAGTCCCAGCAGTTTCACATCCTAAAGCTTCTGAATCGTCTAATATCACATCCATGAGTTCGAGTTCATCTGTCGATCCACCAAGTTTGTCTCTCGGATTATCCTTGTCTTCTGGTCAAAGACAAACTTCAACAACAAGGCATTCATCTATACTCTCCATGCCGTGTTTCAACAATGGAGATAACATTATAAGTGTTGCTTGA 837 0.4731 MSHKRATADSAISADGDGSAGEIMLFGVRVVVDSMRKSVSMNNLSQYEHPQDAPNSNNGNKEDSLAAGYASADEAAAHNSGRHRERERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAIPIEEQIQHQDYMSHSNPVCPVTPETTNINGFAMMPVYPMNIVGSGMISVPAVSHPKASESSNITSMSSSSSVDPPSLSLGLSLSSGQRQTSTTRHSSILSMPCFNNGDNIISVA 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1519 278 CDD SANT 93 138 IPR001005 -
Alju13g1519 278 SMART sant 90 140 IPR001005 -
Alju13g1519 278 FunFam transcription factor MYB1R1 92 143 - -
Alju13g1519 278 Gene3D - 92 144 - -
Alju13g1519 278 MobiDBLite consensus disorder prediction 73 92 - -
Alju13g1519 278 MobiDBLite consensus disorder prediction 220 263 - -
Alju13g1519 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 142 IPR017930 -
Alju13g1519 278 ProSiteProfiles SANT domain profile. 89 142 IPR017884 -
Alju13g1519 278 MobiDBLite consensus disorder prediction 77 92 - -
Alju13g1519 278 NCBIfam myb-like DNA-binding domain, SHAQKYF class 89 140 IPR006447 GO:0003677
Alju13g1519 278 SUPERFAMILY Homeodomain-like 88 143 IPR009057 -
Alju13g1519 278 ProSiteProfiles Myb-like domain profile. 86 138 IPR001005 -
Alju13g1519 278 Pfam Myb-like DNA-binding domain 93 138 IPR001005 -
Alju13g1519 278 PANTHER TRANSCRIPTION FACTOR KUA1 14 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1519 Alju-ChrAlju13 33568609 33570159 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Alju13g1519 Myb_DNA-binding 1.4e-11 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g2623 06 53256080 53257709 Alju13g1519 13 33568609 33570159 CCT
Alju13g1519 13 33568609 33570159 Alju13g1519 13 33568609 33570159 ECH