Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1514 ATGGATCCTCCTCTCATCAACGAGTCTACATTCTCCCACGCTAACCCATCGGCCTATAGTCTCGCCGAGATTTGGCCTTTCCCTGGGGACCACCCTGCCGGAACTGGATTGGGCCTCCGAATGCCTCATTTAGGTCACAATTTGGGCCCCTTCCCCGATAATTCCCTCCATCGAGATGGCTCCGCCGAGGAGTCCACCGTCACGGAGCAGAGCGTCGGCGTCGGCGGCGGCGGAGGAAATCACAGGAAGAGGAAAGATGCCACCTCTGAGGACGAGTCCTCAAAGATGGCTTCCATGATTAGTGCCAATGATTTGAATGATTCTGGCAATAAACGGATAAAATTAGGAGTATCCGAGGATGAAACTGGTGGTCCGAAGGCTGAAGCAGAAGCAAGTTCAGTAGCTGGGAGCAAGTCAGCTGAACAAAGTACTAAACCTCCTGAGCCTCCTAAGCCAGATTATATACACGTGAGAGCAAGAAGAGGCCAAGCTACTGATAGCCACAGTCTTGCAGAAAGAGCAAGAAGGGAAAAGATCAGCGAGAGGATGAAAATTCTACAAGATTTGGTCCCTGGATGTAACAAGGTAATCGGTAAAGCACTTGTCCTGGATGAGATAATCAATTATATTCAATCACTGCAGCGGCAGGTTGAGTTCCTATCGATGAAGCTCGAAGCAGTTAATTCAAGAATGAACATGAACCCGACTATCGAAGGGTTCCCTTCAAAAGATCTTGGTGCTCAGACATTTGACGTTGCTGGAATGATATTTGGATCACAAGCAGGCAGGACGTATGCCGAGGGAACACAACTCGGATGGCTGCAAATGCAGATAGGTGGTGGTTTCGAGAGAGCAACATAG 861 0.4936 MDPPLINESTFSHANPSAYSLAEIWPFPGDHPAGTGLGLRMPHLGHNLGPFPDNSLHRDGSAEESTVTEQSVGVGGGGGNHRKRKDATSEDESSKMASMISANDLNDSGNKRIKLGVSEDETGGPKAEAEASSVAGSKSAEQSTKPPEPPKPDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNMNPTIEGFPSKDLGAQTFDVAGMIFGSQAGRTYAEGTQLGWLQMQIGGGFERAT 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1514 286 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 233 IPR036638 GO:0046983
Alju13g1514 286 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 213 IPR011598 GO:0046983
Alju13g1514 286 MobiDBLite consensus disorder prediction 50 154 - -
Alju13g1514 286 MobiDBLite consensus disorder prediction 93 108 - -
Alju13g1514 286 Pfam Helix-loop-helix DNA-binding domain 167 214 IPR011598 GO:0046983
Alju13g1514 286 Coils Coil 210 230 - -
Alju13g1514 286 FunFam Basic helix-loop-helix transcription factor 160 233 - -
Alju13g1514 286 CDD bHLH_AtBPE_like 153 236 - -
Alju13g1514 286 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 67 256 IPR024097 GO:0006355
Alju13g1514 286 Gene3D - 160 237 IPR036638 GO:0046983
Alju13g1514 286 SMART finulus 169 219 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1514 Alju-ChrAlju13 33553529 33556283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1514 1 286 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 56.122 7.05e-88 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju13g1514 HLH 2.3e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju13g1514 13 33553529 33556283 Alju13g1514 13 33553529 33556283 ECH