Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1502 ATGACATCTCTTGAGCAATACCTTCGATTTGATGCCTCATCATCTAACGTTTTTCCTCTCTTGTTGCAGAAAGTTTCTATCGAGGAACAGGCTTCGCTGGTCTGGCAATTCATATGCAGTGTTCCTATAATGCTGCTGCAGGAAATTTTGCCATGGATGGTATCATTCCTTTCTGCAGACAAACAAGAAGAAGTTCAGAAGTTCTTAAATGAAATTACACCAATGGAGAAAGAACTGCAAGAGGTTTTGATTGCTTGGCTTGGTAGCAACAGCCAAATCTTCACCGAGGGCCGTTCACTGAATGAAGTTGCTCAATGTGCTGATGGATTCCTGCATAAGAAAAGACCACGTGGGTTGAGTTATCACAATAAGAATTTTAAAGCCATTTCAAATAAGATGAAAGAACATTGTTCAGACGTAGAAGATAGAGCCAATCAAGTTAATGTTCTTTATCTTTGGCATAATGCCATCAAGAAAGATATGACAGAGATGCTAGAAGAACTTCAACAAATCAGAAACAACACTTGTTTTCATAATTTGGATTCGCTACTCATCCAACTAAAATTCTTCGCTGATGTTCTCATCTTCTACAGCAATGCTCAGAAGAAATTCTTTTACCCAGTTTTGAGTGAACTTGCTAATGGCTGGTTGACCAAGTCAAGTGAACAATTTCTCGGAGAAAGACATATTGAAGATTTACAGCAGTTGCTTTTGTATAATGCTGAAAGCGGTATTCCTTTGTCAGAATTCGTGGGGAAGCTTTGCAGAGAGCTTGAACTATTTATGACAAGAATCAACAAACAATTTGCTTTTCAAGAAACTGAGGTATTTCCTGTCATTTGCTTGAATAGCTACAATGGAATGCTAGAGGAACTCATTAGCTTGAGCCTGCACATGATGCCACTTGGGTTGCTGAAGTGCGTTCTAATTTGGTTCTCAGGTCACTTGTCTGAAAATGAATCTAGGTCCATTCTCAGTGCCATAAAACAAGGAAATCTTTTTGTCCATGAAGCTTTTGCATCACTTGTACATGAGTGGTTCCGTGTTGGTTATTCAGGTAAAGCTTCCATTGAAAAATTCCAACAAGACTTGCGACATATTTTTAAAAGAAAAAACTCCTTGTTAACTGAGCAAGTCAAAGAAGCTCCCAGGTTTTCTTTCTTAAATTATGGCAAACCTCATAAAGGATCTATCCTTAGTAATGGCGTGTCTTATTCATCATCTTCTGGATTCAACAATGTGACCAAGTATGAGACACCATACTCTATGGGCATTAATATGCAAATATTGTTCCCCACCACAGCTATGAAGTTAAACCGTCATCCTAGATTTCAGGCAGCTGATAGTTCTTCTGCTCCCTTTCTTGATGATTCAAAGCCTATTGACCTTATATTCTTCTTTCACAAAGCTATCAGGAATGATTTGGATTACCTTGTTCTTGGATCAGCTCAGATAGAAAAAAATGTTGAGATGCTTGTGAATTTCAGCAAAAGATTTCATCTAATATGCTTTCTTCATCGAATCCATAGTGAGACAGAGGATGAGATAGCATTCCCAGCCTTAGAGGCAATGAGTAAAGTGAAAAACATTAGCCTCTCTTATACGATTGATCACAAATTCGAAGTTGAACACATCAAGAAAATATCCTGCATCCTTGAAAAGATGTTCGATCTGCATTTTTCAGTTTCTAGCTTTGAAACAGATACATGGGAGCAGAGAATGCTAACGCATCATCAACTGTGCAGAAAGCTGCAGGAAATGTGCAAATCAATGCATAAAATACTTTCTGACCACATGAATCGTGAAGAAATTGAAATTTGGCATTTAATTAGAGAATTCTTCTCCAATAAGGAGCAAATGAAAATCGTAGGGTGCATGCTTGGAAGAATCAGGGCAGAAATATTACAAGATATGATACCCTGGTTAATGGCATCTTTAACCCCCGAGGAACAACATGTTTTAATGTTCTTATGGTCCATGGTTGCCAAAAATACAATGTTCGATGAATGGCTAGCTGAGTGGTGGGATGGGTACAAGATAGCAAAGGAGACAGAAAGTTCAAATGATCCTCCTCTGCAGACTGTTGATCCATTGGAGGTCATATCTAAATATTTATCTAAAGAAGTTCTCGATGAACTCCAAGAAGAATCCACTTCCAACAAAAGCGAATTCTCTTCACGGAGGGATCATATTGGTGATAATAATAAGCAGTCTCACATTTGCAATCGTCATGGCAAATCCCGAGTTTGTAAAGCAGATAAGATTAGCAGTGAATGTTCAGAATGCAGAAATCAATTGAGTGATAATAACAAACAAACATTCACTAAAGTAACAGATATCACAAGTTCGATCAATGACAAGGGTCAGTCTTTTCAATCCTGTGAAAACTCTGGGCACTATGACCATCTTATGAAAATAAGTCCAGATGATCTGGAGATGGCTATAAGAAGGGTATCTCGTGACTCTTCCTTAGATCTTCAGAAGAAGTCATACATAATTCAGAATCTGCTTATTAGCCGTTGGATTGTCAAACAGCATATCTCTTGTTCAGAAGGCATTGTGACAAACAATGGGCAGGAATTTCCTGGGCAGCATCCGTCTTACAGGGACTCTCTCAAATTAATCTATGGCTGCAAACACTACAGGAGAAGCTGTAAACTTTTAGCTTCCTGCTGCAACCAACTTTATACATGCCTACATTGCCATAATGATGCGACAGATCATTCAATTGACAGGAAGTCTATAACAAAGATGATGTGCATGAAGTGCTTGAAGATTCAGCCAATCAGTGCCACATGTTCAACTGTATCTTGCGGTGACTTACCCATGGCAAAATACTACTGCAGGATCTGTAGATTGTTTGATGATGAAAGGGAAATTTACCACTGTCCCTATTGTAACCTGTGCCGAGTGGGAAAAGGCTTGGGCTTAGACTACTTTCATTGTATGAATTGCAATGCTTGTATGTCTCGTTCCCTCACAGTACATATATGCAGAGAGAAATCTTTAGAGGATAACTGCCCAATCTGTCATGAATACATCTTCACGTCCTGCTCTCCAGTAAAGGCCCTCCCTTGTGGTCATGTCATGCACTCAACATGTTTTCAGGAGTATACCTACTTCGATTATACCTGTCCAGTATGTTGCAAGTCACTTGGAGACATGCAGGTATATTTTAGGATGTTAGATGCGTTATTGGCTGAAGAGAAAATCCCAGACGAGCATTTGGGTCAAACTCAGATGATACTATGCAATGACTGTGAAAAGAAAGGAACTGCTCCCTTCCACTGGCTTTACCACAAATGCTCTTCTTGCGGGTCCTACAATACAAGAGTTATATGA 3342 0.3911 MTSLEQYLRFDASSSNVFPLLLQKVSIEEQASLVWQFICSVPIMLLQEILPWMVSFLSADKQEEVQKFLNEITPMEKELQEVLIAWLGSNSQIFTEGRSLNEVAQCADGFLHKKRPRGLSYHNKNFKAISNKMKEHCSDVEDRANQVNVLYLWHNAIKKDMTEMLEELQQIRNNTCFHNLDSLLIQLKFFADVLIFYSNAQKKFFYPVLSELANGWLTKSSEQFLGERHIEDLQQLLLYNAESGIPLSEFVGKLCRELELFMTRINKQFAFQETEVFPVICLNSYNGMLEELISLSLHMMPLGLLKCVLIWFSGHLSENESRSILSAIKQGNLFVHEAFASLVHEWFRVGYSGKASIEKFQQDLRHIFKRKNSLLTEQVKEAPRFSFLNYGKPHKGSILSNGVSYSSSSGFNNVTKYETPYSMGINMQILFPTTAMKLNRHPRFQAADSSSAPFLDDSKPIDLIFFFHKAIRNDLDYLVLGSAQIEKNVEMLVNFSKRFHLICFLHRIHSETEDEIAFPALEAMSKVKNISLSYTIDHKFEVEHIKKISCILEKMFDLHFSVSSFETDTWEQRMLTHHQLCRKLQEMCKSMHKILSDHMNREEIEIWHLIREFFSNKEQMKIVGCMLGRIRAEILQDMIPWLMASLTPEEQHVLMFLWSMVAKNTMFDEWLAEWWDGYKIAKETESSNDPPLQTVDPLEVISKYLSKEVLDELQEESTSNKSEFSSRRDHIGDNNKQSHICNRHGKSRVCKADKISSECSECRNQLSDNNKQTFTKVTDITSSINDKGQSFQSCENSGHYDHLMKISPDDLEMAIRRVSRDSSLDLQKKSYIIQNLLISRWIVKQHISCSEGIVTNNGQEFPGQHPSYRDSLKLIYGCKHYRRSCKLLASCCNQLYTCLHCHNDATDHSIDRKSITKMMCMKCLKIQPISATCSTVSCGDLPMAKYYCRICRLFDDEREIYHCPYCNLCRVGKGLGLDYFHCMNCNACMSRSLTVHICREKSLEDNCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTYFDYTCPVCCKSLGDMQVYFRMLDALLAEEKIPDEHLGQTQMILCNDCEKKGTAPFHWLYHKCSSCGSYNTRVI 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1502 1113 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 505 1113 - -
Alju13g1502 1113 SUPERFAMILY CHY zinc finger-like 870 934 IPR037274 GO:0008270
Alju13g1502 1113 MobiDBLite consensus disorder prediction 713 739 - -
Alju13g1502 1113 Pfam CHY zinc finger 878 953 IPR008913 GO:0008270
Alju13g1502 1113 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1000 1050 IPR013083 -
Alju13g1502 1113 SUPERFAMILY RING/U-box 1005 1053 - -
Alju13g1502 1113 Pfam Zinc-ribbon 1054 1111 IPR039512 -
Alju13g1502 1113 Gene3D nmb1532 protein domain like 458 628 - -
Alju13g1502 1113 Gene3D nmb1532 protein domain like 142 292 - -
Alju13g1502 1113 ProSiteProfiles Zinc finger CHY-type profile. 871 940 IPR008913 GO:0008270
Alju13g1502 1113 CDD Hr-like 462 607 - -
Alju13g1502 1113 ProSiteProfiles Zinc finger CTCHY-type profile. 943 1006 IPR017921 -
Alju13g1502 1113 SUPERFAMILY Zinc hairpin stack 944 998 IPR037275 -
Alju13g1502 1113 ProSiteProfiles Zinc finger RING-type profile. 1007 1048 IPR001841 -
Alju13g1502 1113 SMART ring_2 1007 1048 IPR001841 -
Alju13g1502 1113 Coils Coil 154 174 - -
Alju13g1502 1113 Gene3D - 1078 1113 - -
Alju13g1502 1113 CDD RING-H2_Pirh2-like 1006 1048 - -
Alju13g1502 1113 FunFam Zinc finger protein-related isoform 1 1002 1051 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1502 Alju-ChrAlju13 33472008 33477553 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1502 2 703 C2H2 Transcription Factor Family AT3G18290 30.026 8.91e-89 310