Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1452 ATGTATGTGATGGGAAGGCCACCTTGCTGCGACAAAATTGGGATCAAGAAGGGACCCTGGACTCCCGAAGAAGACATCATCTTGGTCTCTTATATTCAAGAACACGGACCTGGAAATTGGAGATCTGTTCCCATCAAGACAGGTCTGATGAGATGCAGTAAGAGTTGCAGGCTTAGATGGACTAACTATCTTCGTCCTGGTATCAAAAGAGGCAACTTCACCGACCACGAGGAGAAGATGATCATCCACCTCCAAGCTCTGCTCGGCAACAGGTGGGCTGCTATAGCTTCGTATCTTCCCCAGAGGACGGACAACGACATAAAGAATTATTGGAACACCCATTTGAAGAAGAAGCTCAAGAGGCTTCAAACTGGGACTGAGGCTGGTGACGACCAAGAAGGTGACTCGTTTTCACAGACCAAGGGCCAGTGGGAGAGAAAGCTTCAGACAGACATCCACACGGCCAAACAGGCTCTGTGTCATGCTCTGTCCCTCGACCAGCCCACCGAAACCGAAACCAAGCCATCCAATCTCACAATCCAAACATCCCCTTACGCATCAAGCACCGAGAACATAGCCCGATTACTTCAGAACTGGATGAATAAGTCCCCAAATCACCCACCATCAGGAGCTCACTTCATCAACATGGGTACAACAGGTTCCAGTTCGTCCAGTGAAACGACGACGTATAATAGCAACAGTAACCACAATGTTCTAGATTCTCTGTGGAGCTTTAACTCTGATACTTCTCAACAATCTGTGTCTGTGGACGACAACACCAACAGCAACATGTTCCAGGACGAGAGCAAGCCGAGCTGTGAGTCGCATCAGCTTCCTCTGACTCTAATAGAGAAGTGGCTCTTTGATGATGGCTTAGCTCAGAACCAGGATGATGACCTAATCAACGACTCAGTACTTCTGGAAGAAACTACTCCACAATTGTTCTAG 948 0.481 MYVMGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPIKTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKRLQTGTEAGDDQEGDSFSQTKGQWERKLQTDIHTAKQALCHALSLDQPTETETKPSNLTIQTSPYASSTENIARLLQNWMNKSPNHPPSGAHFINMGTTGSSSSSETTTYNSNSNHNVLDSLWSFNSDTSQQSVSVDDNTNSNMFQDESKPSCESHQLPLTLIEKWLFDDGLAQNQDDDLINDSVLLEETTPQLF 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1452 315 MobiDBLite consensus disorder prediction 123 145 - -
Alju13g1452 315 Gene3D - 16 69 - -
Alju13g1452 315 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Alju13g1452 315 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Alju13g1452 315 MobiDBLite consensus disorder prediction 205 233 - -
Alju13g1452 315 CDD SANT 72 115 IPR001005 -
Alju13g1452 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Alju13g1452 315 MobiDBLite consensus disorder prediction 250 272 - -
Alju13g1452 315 FunFam MYB-related transcription factor 16 69 - -
Alju13g1452 315 CDD SANT 19 64 IPR001005 -
Alju13g1452 315 MobiDBLite consensus disorder prediction 129 145 - -
Alju13g1452 315 MobiDBLite consensus disorder prediction 212 233 - -
Alju13g1452 315 FunFam Transcription factor MYB30 71 129 - -
Alju13g1452 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 68 IPR017930 -
Alju13g1452 315 Gene3D - 71 145 - -
Alju13g1452 315 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Alju13g1452 315 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 241 - -
Alju13g1452 315 SMART sant 16 66 IPR001005 -
Alju13g1452 315 SMART sant 69 117 IPR001005 -
Alju13g1452 315 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Alju13g1452 315 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1452 Alju-ChrAlju13 33091248 33092372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1452 4 290 MYB Transcription Factor Family AT5G62470 50.867 1.74e-104 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju13g1452 Myb_DNA-binding 2.2e-14 CL0123