Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1439 ATGGGAAGAGTTAAGCTAAAGATAAAGAAGTTAGAGAGCATTAGCAATCGACAAGTGACTTTTTCAAAGCGAAAGAGTGGAATATTGAAGAAAGCCAAGGAATTATCAATATTGTGTGATATAGACATTGCCCTTCTCATGTTTTCTCCGACAGGGAAGCCTATATTACTACAAGGAGAGCGCAGCAATCTTGAGGAGGTCATTGAAAAATTTGCTCAACTAAGTCCACAAGAAAGGGCCAAAAGGAAATTGGAAAGCCTTGAAGCACTAAAGAAAACCTTCAAGAAGTTGGATCATGATGTAAAAATACAAGATTTCTTGGGTTCAAGCTATTGGAATAACATAGAAAAGATCAATAATGTTGAGCATCTTAGGCAAATGGAAGAGTTACTAAAGGAGTCAGTCAACCGAGTACGTCTACTCAAGGAAAATTTGGGGAAACACCAACTAATGTCACTTGAATGCGCTAACCAGGAAGGGATGACTTTACCCATGATGATGGCTGGTTTGCAAGAAGCTCAACCTCTGTCTTGGCTATTGAATAATGATAATAATCAATTGATAATGCCTAGTGAACCAAAATTTCTGCCATATAGTGATAATCCCAATAGAGGTGCTGAATGCTCCATTAACGTTTCACTACCAGACTATTCTGGTTATATAAGCACTGGCAAACTTGAGGCCAGCAACTCAGCTCAAGTTGCCACTTTGGGTCAGGGTGGTGGTACCATGAATGAGTTTAGTGAAGGTTCTTGCTTAAATGCACAACATTGCGAGCAGTTTTCATACCCTCCACAGCCGGATAATGACGGACAGAAGCATCATCAAGTTATGAACGGTAGACCAAGCCCTGTGGATTATCAAGTTAATAGCGACTTTGATCTGCCTAGATCCATCTTTGAAAATGGACATCAATTCTGGAATTCTACTTCTGCACCTTGTAGCATTGCCATGTACAATGAGAATGGCTACCATCAGGTGAGCAATCCCTTTGTCATTTGA 1002 0.4012 MGRVKLKIKKLESISNRQVTFSKRKSGILKKAKELSILCDIDIALLMFSPTGKPILLQGERSNLEEVIEKFAQLSPQERAKRKLESLEALKKTFKKLDHDVKIQDFLGSSYWNNIEKINNVEHLRQMEELLKESVNRVRLLKENLGKHQLMSLECANQEGMTLPMMMAGLQEAQPLSWLLNNDNNQLIMPSEPKFLPYSDNPNRGAECSINVSLPDYSGYISTGKLEASNSAQVATLGQGGGTMNEFSEGSCLNAQHCEQFSYPPQPDNDGQKHHQVMNGRPSPVDYQVNSDFDLPRSIFENGHQFWNSTSAPCSIAMYNENGYHQVSNPFVI 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1439 333 Coils Coil 77 97 - -
Alju13g1439 333 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Alju13g1439 333 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Alju13g1439 333 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 177 - -
Alju13g1439 333 MobiDBLite consensus disorder prediction 265 287 - -
Alju13g1439 333 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju13g1439 333 Coils Coil 124 144 - -
Alju13g1439 333 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Alju13g1439 333 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Alju13g1439 333 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju13g1439 333 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju13g1439 333 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju13g1439 333 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1439 Alju-ChrAlju13 32996444 33000018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1439 1 276 Type I MADS-box Gene Family AT2G03060 42.368 4.06e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Alju13g1439 SRF-TF 4.6e-21 No_clan