Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1415 ATGGGTACATCACTGCCGGTGAATATAATACTCTTCGTCGTCGTCGTCATGACTGAACCTTTGCTTCCAAACTCCATTCTCCCTCCTCAACAAAGACAAGTCCCCATGTCTAATTATGAGGTTGCAGAGCTAACCTGGAAAAACGGCCAGCCTGTCATGCATGGGCTTAGTGGGCTCCTACCAACGGCCCACCAAAAGCCCACATGGATCAGGGCCCATGATACTCTGGAGTCCATTGTTCAACAGGCTACTACATCTACATGCCAACGTCGTCAAAAGTCAAATTTCTTCATGATGCCACAGGATCATAATCATAACCCAACCACTACTAGCACCACCGTTGCCCCCTCCGCCGGCAGGACTGAGAGATCAGGCCAAGCACAATCGGAGCCGACTCTGGCAAGGAAGCGGGTCCAGTCAGATTCCGGCTACCTCTACCTCGGCAACGGTTTGGAAGAATGTGAACCCAGCAGTGGAGGTTGTGCTAGTCCCAGCGCCACATTCTGTAGAAGATTCAAGAAAAGTAAAACACTTGAGGATGATTCCCCTTCTCTTTGTGAATCGGAAAACCAAGACCAAGAAGAAGATAGAGACACTAAGGAAGAAACAGACCGTTCCAACTCAACAAGAAGAAATCGAGCAGCGGCTATCCATAACCAGAGTGAGCGGAGACGAAGGGATAGAATTAATCAGAAAATGAAAGCTTTGCAGAGGTTGGTGCCCAACGCCAGCAAGAATGACAAAGCTTCAATATTAGACGAAGTGATTGAGTACTTAAAACAGCTTCAAACACAAATACAGATGATGATGAGTATGAGAAACATGCCACAGCAGATGATGATGATGATGCAACAACAGCTTCAGATGTCTATGCTGGCTAGAATGGGTCTTGGGCTGGGCTCAGGCCCAAGCCAAGGCCCAGCAGGAATGGGCCTTGCCTGCCCACCAGTTCTTCCTTCTCTTCCACCACAACTCACAATTGCAGCTCCTACTATTACTCCTTCCTTCATGATGTCTCCATTGGTTCAAGCCCATGCTCCTCTTCCAAGGCCTGAACCTGCAGCATCTGCAGCTACCTCTAATGCCTCAGTGTCTTTGCCTGATCCTTATACCACTTTTCTTTCACAATCAGTAAATATGGATATTCTCAGCAACATGGCAGCGCTTTACCGGCAACAGATGAGACAGAACAGTCAGAACATGAGGAGCCAACATCATGGACAAGGGAATTGA 1233 0.4801 MGTSLPVNIILFVVVVMTEPLLPNSILPPQQRQVPMSNYEVAELTWKNGQPVMHGLSGLLPTAHQKPTWIRAHDTLESIVQQATTSTCQRRQKSNFFMMPQDHNHNPTTTSTTVAPSAGRTERSGQAQSEPTLARKRVQSDSGYLYLGNGLEECEPSSGGCASPSATFCRRFKKSKTLEDDSPSLCESENQDQEEDRDTKEETDRSNSTRRNRAAAIHNQSERRRRDRINQKMKALQRLVPNASKNDKASILDEVIEYLKQLQTQIQMMMSMRNMPQQMMMMMQQQLQMSMLARMGLGLGSGPSQGPAGMGLACPPVLPSLPPQLTIAAPTITPSFMMSPLVQAHAPLPRPEPAASAATSNASVSLPDPYTTFLSQSVNMDILSNMAALYRQQMRQNSQNMRSQHHGQGN 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1415 410 MobiDBLite consensus disorder prediction 179 228 - -
Alju13g1415 410 Pfam Helix-loop-helix DNA-binding domain 218 263 IPR011598 GO:0046983
Alju13g1415 410 MobiDBLite consensus disorder prediction 198 228 - -
Alju13g1415 410 Coils Coil 219 246 - -
Alju13g1415 410 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 41 403 IPR031066 -
Alju13g1415 410 MobiDBLite consensus disorder prediction 98 137 - -
Alju13g1415 410 Gene3D - 208 273 IPR036638 GO:0046983
Alju13g1415 410 MobiDBLite consensus disorder prediction 98 136 - -
Alju13g1415 410 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 216 287 IPR036638 GO:0046983
Alju13g1415 410 SMART finulus 219 268 IPR011598 GO:0046983
Alju13g1415 410 CDD bHLH_AtPIF_like 213 270 IPR047265 -
Alju13g1415 410 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 213 262 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1415 Alju-ChrAlju13 32789426 32793148 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1415 33 276 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 41.791 4.40e-40 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju13g1415 HLH 1.3e-14 No_clan