Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1413 ATGGTACTCACGGAAGAACAAAGAAAACAAGCCGAAGCGAACCGATTAGCGGCCATTGAAAGACGAAAGGCAGTGTTAGAAGCTCGTGGAGAGAAAGACCCTTGGCAACTCTTCAAGTGCCGTAAGATCTCTTCCGAGTCTATTCCAAAGCCCACACCCACCGTTCACCAATCCCAATCAGTCTCCGTTGATCCTGTTTCTGCCACACCTTTGCCCCATAAATTTTTGGTTAGGCTCGAAATATGCTCTCCCGATTCCTTCTCTGCAACTCCTATTCCCCTTCGGGGTTCCCCCTATCCCGGAGAAGCATGGTGCTTGCAGAGACTAAGTGATCATTTGTCCAATGTCATGCCTTCACACTACACCCAGAATCATGATGGAAGAAACGCCTGTGTGTATTACTTGAGGGATTACCATGCTGTCCTTAAATGTTTGAAGATTGTCACGGACATAGAAGTTGAAGAAATTCCGCGGGCAACTTTGAAAGCCGTTGAAGCATTTTCACATTTCTCTGGCACGGAGTGCTGGATACCCTGCAGGCCCGAGCATTTGTCTGATGAAAAGGTTGATGAGTTAATTGGGAAGCTACCCAGGGCTCTGTTGGATGCACTGTTGCCTTTCCAAAGGGATGGTTTAAGATTTGGATTGAGAAGGGGTGGCCGGTGTCTTATTGCTGATGAAATGGGCCTTGGGAAAACACTCCAGGCTATTGCTATTGCAGGATGTTTCTTGAATGAAGGTTCTATACTCGTTGTTTGTCCAGCTGTTTTGCGTTTTACATGGGCAGAAGAATTAGAGCGTTGGCTTCCCTTTTGTTTGCCTGCTGATATCCATCTGGTCTTTGGCCATCGAGATAATCCTGCTTATTTAACAAGATGCCCTAGAATTGTAGTTATTTCTTATACCATGCTCCATCGCTTGAGGAAGAGCATGCTTGAGCGAGAATGGGTTCTCTTGATTGTTGATGAATCTCATCATGTGCGGTGTACGAGGAAGAGCTCAGAACCAGGGGAGATAAAGGCTGTTCTTGATGTAGCTTCAAAAGTCAAGCGCATAATACTGCTATCTGGGACACCTTCTTTGTCAAGGCCATATGACATATTTCATCAGATAAACATGTTATGGCCTGGACTGCTGGGCGAGAATAAATATGTGTTTGCTAAAACTTACTGTGATTGTAAATATATCAAGGGAAACCATGGCAAAATTTATGCGGATTTTTCAAAGGGCATTCGCTTGGAAGAGTTGAATGTGTTACTCAAGCAAACTGTTATGATAAGGCGTCTGAAGGAACACGTGCTGCAACAATTACCCCCAAAACGGAGGCAAATTATAAGGTTGTTGTTGAAGAGATCAGATGTAGTTGCTGCAAAGATGGCAGTTGGAAAGTTGAATGGAAGTACTTCCAAAAGTGACACTGAAGACAAGACTTTGGACAGTTTTGATGAACCTGATGGGATGTTGAAGAGATCAGACGTAGTTGCTGCAGATACTGCAGTTGGGTTGTTAAATATTGACAGTTCGGAAAGTGTTGACGAAGAGATAACTTTGGAAACCTTGGATGAATCTGAAGGGAAGCTTTCCTACCAGGAACTTGGAATTGCAAAGCTTTCTGGATTTCGTGAATGGCTGTCCTTCCATCCAGTCATTGCCGGGTCAGAAAATGCTTCGAAAATGATCATTTTTGCTCATCACCACAAAGTTCTTGACAGGGTGCAGGAGTTTGTGTGTGAGAAAGGGATTAGTTTTGTCCGAATTGATGGAAACACACTTGCTAGGGATAGGCAGTCAGCGGTGGTGTCATTTCGTTCAAGACCAGAGGTTAAAATTGCAATAATTGGTATTTTAGCAGCAGGATTTGGAGTTGATTTCTCAACAGCCCAAGATGTCGTGTTCTTGGAGCTTCCTCAGTGCCCAACCCTGATGCTGCAGGCTGAGGATAGAGCTCATCGACGAGGACAAACAAATGCAGTCAATGTATATATCTTTTGTGCAAAGGATACTTTGGATGAGTCGCATTGGAAAAATCTGAACAAAAGTTTGCACCGTGTCTCATCTACAACAGATGGAAAATATGATGCAATGAAAGAGATACAGGTTGAAGGTGTTTCTTACTTGGACACATTCTTCAAGACCAAGAGAAACTATGAAGGGCGATCTGCATCTGATGAAACTTCAGAACAGGTGACCACGTTGCCAGATTCTGTCTCAGTTTCAAATTTGCAACATTCTCAAGCAAATTCCGAGGAATCAGAAGCAAAATTGGGTGATCAAGCTGATCAGCAGACTTGCTTTGCTGACAAGGTTTCCTGCCCAGAATCAAGCGAGACTTCTATTTTGGATGTAGATTTAGATGTAGATGTTTTTGACACCAAGGAAAAATGCTCTGGTTTTGACATGAGTAAGCTGGACAAGAGTTATGGAAGCAATGATCAGATGGTCAGTGATGAAGATGATAATCAAGAAGAAGAGAATAAAAAATCATTAACAATGAAAACAGATGACTACCAACCTGTTCAGCCAGTTGAAGCCGAAAAAAGTTCCTCTCCTCACATTGAATCTCTACGATTTGAGGTGAGCTCATACACCGGAAGGGTCCACTTGTATACTTGCATTTTGGGTGCAGATACAAGACCAAGACCACTTTGTAAGAATTTTCGACCAGAGGAACTTGAGTTGCTCAGTTCCATTTCTGATGATGATAAGAAAGAGGAGACTATTGGGGACAATCCTGCTTTTGAAAATGCTCTATTGGGATTTTTAAATGAATGGAAGAAGTTAAGGCCAATTGAGCGAAGGAAGTTACTAGGAAAGCCATTACAACTTCCCTTGGCTGTTGAATTGTGCTACTTGAGCGAAAGTAGTAGCCACGACAAGAAGGGATTATTAAATGGTGGAAGCAAACGGCGCATGACTCCTTTAATGGAGATAAGCCATCCTTTACCATCAGATGCTGTTTGGAGAAAGGTCTGTCTGCGAAGTGGCAATGGTAAGAAAGAGAAAGAATACACTCAAGGTTGGACTCTGACAAATGAGCCACTCTGTAAGCTTTGTCAAAAGATATGCATGAGTAACAATGCCAAGACACCTGAATACTTTGAAGATCTTTTCTGTAACCTAGTCTGCTATGAAGAGTATCGCATGAGAACGAGCAACAAATTCCTTCGTCAGGAACTTTTTGAAGTTGAACATGGTGTGTGCTCGAATTGCCATTTAGACTGTCATAGACTAGTTGAACATATAAAACCTTTGCCACTAGCTAAGCGAAAAGAGTACATTGAGAAAGTGGCACCAAATGTGGCTAAGCGAAAAAACATGCTTGAGAAGCTTGTCAATGATCCAACTGAAGGCAATGCATGGCATGCTGATCATATTGTTCCAGTATATCAAGGCGGAGGTGAATGTAGACTCGAGAATATGAGGACTCTTTGCGTGGCCTGCCATTACGATGTTACAACAGCACAGTGTGCTGAACGACGCAAAGAGAGGGCCAGGGCCAGGAAATTACTAAAATTAGTAATGAGTGAGTTAAAGGCAGGTCAAACAAAGGTCGCCACATGTTCTAACATTAAGGAGCAGGGTCTCGTTGAGTTACAAGAGGATGAAAATGAGGATGAGCTCATTGTGAAGGTGCCTGGAAGTGCTTATTCAGTAGCTAATGGCTAA 3666 0.4291 MVLTEEQRKQAEANRLAAIERRKAVLEARGEKDPWQLFKCRKISSESIPKPTPTVHQSQSVSVDPVSATPLPHKFLVRLEICSPDSFSATPIPLRGSPYPGEAWCLQRLSDHLSNVMPSHYTQNHDGRNACVYYLRDYHAVLKCLKIVTDIEVEEIPRATLKAVEAFSHFSGTECWIPCRPEHLSDEKVDELIGKLPRALLDALLPFQRDGLRFGLRRGGRCLIADEMGLGKTLQAIAIAGCFLNEGSILVVCPAVLRFTWAEELERWLPFCLPADIHLVFGHRDNPAYLTRCPRIVVISYTMLHRLRKSMLEREWVLLIVDESHHVRCTRKSSEPGEIKAVLDVASKVKRIILLSGTPSLSRPYDIFHQINMLWPGLLGENKYVFAKTYCDCKYIKGNHGKIYADFSKGIRLEELNVLLKQTVMIRRLKEHVLQQLPPKRRQIIRLLLKRSDVVAAKMAVGKLNGSTSKSDTEDKTLDSFDEPDGMLKRSDVVAADTAVGLLNIDSSESVDEEITLETLDESEGKLSYQELGIAKLSGFREWLSFHPVIAGSENASKMIIFAHHHKVLDRVQEFVCEKGISFVRIDGNTLARDRQSAVVSFRSRPEVKIAIIGILAAGFGVDFSTAQDVVFLELPQCPTLMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNLNKSLHRVSSTTDGKYDAMKEIQVEGVSYLDTFFKTKRNYEGRSASDETSEQVTTLPDSVSVSNLQHSQANSEESEAKLGDQADQQTCFADKVSCPESSETSILDVDLDVDVFDTKEKCSGFDMSKLDKSYGSNDQMVSDEDDNQEEENKKSLTMKTDDYQPVQPVEAEKSSSPHIESLRFEVSSYTGRVHLYTCILGADTRPRPLCKNFRPEELELLSSISDDDKKEETIGDNPAFENALLGFLNEWKKLRPIERRKLLGKPLQLPLAVELCYLSESSSHDKKGLLNGGSKRRMTPLMEISHPLPSDAVWRKVCLRSGNGKKEKEYTQGWTLTNEPLCKLCQKICMSNNAKTPEYFEDLFCNLVCYEEYRMRTSNKFLRQELFEVEHGVCSNCHLDCHRLVEHIKPLPLAKRKEYIEKVAPNVAKRKNMLEKLVNDPTEGNAWHADHIVPVYQGGGECRLENMRTLCVACHYDVTTAQCAERRKERARARKLLKLVMSELKAGQTKVATCSNIKEQGLVELQEDENEDELIVKVPGSAYSVANG 1221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1413 1221 FunFam SNF2 DNA repair protein, putative 178 427 - -
Alju13g1413 1221 Coils Coil 9 29 - -
Alju13g1413 1221 CDD SF2_C_SNF 554 664 - -
Alju13g1413 1221 Gene3D - 182 425 IPR038718 -
Alju13g1413 1221 MobiDBLite consensus disorder prediction 806 833 - -
Alju13g1413 1221 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 1168 - -
Alju13g1413 1221 SMART helicmild6 570 653 IPR001650 -
Alju13g1413 1221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 705 IPR027417 -
Alju13g1413 1221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 428 IPR027417 -
Alju13g1413 1221 CDD HNHc 1112 1152 IPR003615 -
Alju13g1413 1221 Gene3D - 500 738 IPR027417 -
Alju13g1413 1221 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 548 699 IPR001650 -
Alju13g1413 1221 Pfam SNF2-related domain 222 452 IPR000330 GO:0005524|GO:0140658
Alju13g1413 1221 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 213 377 IPR014001 -
Alju13g1413 1221 MobiDBLite consensus disorder prediction 720 759 - -
Alju13g1413 1221 CDD DEXHc_HARP_SMARCAL1 204 428 - -
Alju13g1413 1221 Pfam HNH endonuclease 1118 1149 IPR002711 GO:0003676|GO:0004519|GO:0008270
Alju13g1413 1221 Gene3D - 1043 1172 - -
Alju13g1413 1221 MobiDBLite consensus disorder prediction 722 752 - -
Alju13g1413 1221 SMART ultradead3 200 386 IPR014001 -
Alju13g1413 1221 Pfam Helicase conserved C-terminal domain 553 653 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1413 Alju-ChrAlju13 32763484 32775091 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1413 558 706 RAD5 or RAD16-like Gene Family AT1G11100 33.775 1.89e-15 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju13g1413 SNF2_N 1.7e-23 CL0023