Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1403 ATGCACCCTCCGTCCCACACTACCCTCTTCTCCCATGAACCCTATCCTTCAGAATCATTCTTCTTAACCTTTCCTCAACCAACAATTCACTCCCTGCAATCGGATTTCCCTCTTCATACTCATGGATCCGACCCGCCGGGAAGTTCGGCCTTGTGCGCATTGTTGCGCTCCGCTTATGGGCGTCAATCAATTAATTCTCTGGATACGAACGCGGATTCTCAGAACTTGATCGTCAAACAAGTTCCTTCCATAAGATACGAAGCTGCTGCCAAAACTTCTCTTGAGACTTCGGCTGTGTCCGCAGATTTTCCTTCTGTGAGCAAAGAGCTAGAGTCTAAGAAACAGAAGCTTGTGAAGGGCGGTGCAGCAGTTGATTCAGTAAGGGTTTGCACGATATGTAACGTCGCTTGCAATAGTCAAGATGTATATAACAAACATCTATCTGGGAAGAAGCATGCTGCTCAGATTAACCTGATTTCTGATAATGGGATTGGTCCTTATATTGCTGCTTTAAAGTCTCATGGCATTGGTCCTTGGAAAAAAGGCCCAAAGAAAACTAAGTTTACCCAACCTGCATGGTGTGAACTCTGCAAGATCAGTTGTACCAGCAGGGATGCATATTTGACACACTTAGCTGGGAAGAAACACCTGAGGAACTTGGAGTTGCTGTCAAAATCAAATAATGATTTGCAACTTGAAATCAATCCAGTTATTGGGCCCCATGAAAAGCCTAACACTTGTAAAGATGAAGGGATAGTCTCACATATGCCAAATAAAGCAGCCATGGTAGAGGATATTGAGGCAAAGAAACGTAAACTTGTGGAAGGTGGGGTAGCAGAAACTGATATTAGAATATGCACTCTTTGTAATGTGGTGTGCAACAGCCAAACGGTGTTTTATTTTCACCTTGCTGGGCAGAAACATGCTGATATGGTGAAGCTGAAGCAAGAGCAGGCAGGATCAAATTAA 969 0.4396 MHPPSHTTLFSHEPYPSESFFLTFPQPTIHSLQSDFPLHTHGSDPPGSSALCALLRSAYGRQSINSLDTNADSQNLIVKQVPSIRYEAAAKTSLETSAVSADFPSVSKELESKKQKLVKGGAAVDSVRVCTICNVACNSQDVYNKHLSGKKHAAQINLISDNGIGPYIAALKSHGIGPWKKGPKKTKFTQPAWCELCKISCTSRDAYLTHLAGKKHLRNLELLSKSNNDLQLEINPVIGPHEKPNTCKDEGIVSHMPNKAAMVEDIEAKKRKLVEGGVAETDIRICTLCNVVCNSQTVFYFHLAGQKHADMVKLKQEQAGSN 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1403 322 SMART c2h2final6 284 308 IPR013087 -
Alju13g1403 322 SMART c2h2final6 128 152 IPR013087 -
Alju13g1403 322 SMART c2h2final6 192 216 IPR013087 -
Alju13g1403 322 SUPERFAMILY beta-beta-alpha zinc fingers 123 156 IPR036236 -
Alju13g1403 322 SMART ZnF_U1_5 189 223 IPR003604 GO:0003676|GO:0008270
Alju13g1403 322 SMART ZnF_U1_5 125 159 IPR003604 GO:0003676|GO:0008270
Alju13g1403 322 SMART ZnF_U1_5 281 315 IPR003604 GO:0003676|GO:0008270
Alju13g1403 322 SUPERFAMILY beta-beta-alpha zinc fingers 282 315 IPR036236 -
Alju13g1403 322 PANTHER ZINC FINGER PROTEIN 385B-LIKE 181 319 - -
Alju13g1403 322 Pfam Zinc-finger of C2H2 type 130 152 - -
Alju13g1403 322 Pfam Zinc-finger of C2H2 type 193 216 - -
Alju13g1403 322 Pfam Zinc-finger of C2H2 type 286 308 - -
Alju13g1403 322 SUPERFAMILY beta-beta-alpha zinc fingers 185 223 IPR036236 -
Alju13g1403 322 Gene3D Classic Zinc Finger 106 158 - -
Alju13g1403 322 Gene3D Classic Zinc Finger 266 317 - -
Alju13g1403 322 Gene3D Classic Zinc Finger 179 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1403 Alju-ChrAlju13 32712817 32715238 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1403 129 319 C2H2 Transcription Factor Family AT5G61190 28.054 1.33e-11 63.5