Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1402 ATGGAAGAAGAAGAAGGTCGACTAGTGTTGAAACATGTGTGTAAATTCTGCAGCAAGAGCTTCCCTTGTGGTAGATCTTTAGGAGGTCACATGAGGTCACACATCACCAATAATAATGTTTCAGCTCAAGAAGCAGAGGACAATAATAAACTCACGACGGCGACGAAGAAGAAGACTCAATCCGCCTTCATCAATGGCGGAGCTGGTGGAAGCAGCAGTAAGGTCGTCGGAGAGTACGATCTCAGAGAGAATCCCAAAAAGACTTCGAGATTCGCAGATTCAAGAAGCAAAGAAGAAGAAACAACAGCACTACTAGTCACTGAGGACAAATTCTGCAAAGAGTGTGGTAAAGCGTTTCACTCTTGGAAAGCTCTGTTTGGTCACATGAAATGCCATTCTGAGAAATCTTCCATTAACAACAACTTGGAGAATCAAGATTCTGTTGATGCTGGCCATAAATTCGTTACAGATAGCCAATCAGACAACGAAGGAACTGGCAATAATAATAATAATCCCAACCGAAGAAGAAGATCCAAGAGAAGAAGAACCAGGTTTGTGATGACCCCTGCTTCAACTTCGTCTGTGTCTTTTGCAAATAATCATGCTTCGTCCTCTGTTTCTGAGGTTGAACAAGAGCAAGAAGAGGTTGCTATGAGCTTAATGATGCTAAGTAGGGACATGGGTCATTGGGGTGGTTTGAATTCTCTTTTTGAGTCCTCTGATAACAATTCTGCTTACTTCGAAGCTCGATCTTATGTGGTTCCAACTAATCTGAGCACCAAAATAGAAATAGCTAAAGGGAAGATAACAGTGAGCTTAGCAACAGTTTCCATTAATGAAACAGAACTAGATTCATCAGTGAAGTCAAATTGCAAGAAAGGCAAGTTCAAGTGTACTACTTGCAACAAGATCTTTCATTCATACCAAGCTCTGGGAGGCCATAGATCTAGTCATAAGAAGCTCAAAGGAGGCTGCTCTGCTTCAAGAAACGATCAGAGCAGTGAAAACAGCATAGAAACAGACCTCAACAATGGGTATTATGTGATCGAAAAGCAACATCAAGAGCTTATTGGTTCTGTTAATTTTGAGAACGAGGAAGAGATAGTTAAGAAGAACAGAGTACATGAGTGTCCAATTTGCCTCAAGATTTTTCCATCTGGGCAAGCTTTGGGTGGTCACAAGAGATCTCATTTTGCTGCAGAAGGGTCACTAGTACTTGAGAAGCCAGTTCAGGAAATCAGAGACTTTCTTGATCTTAATCTTCCAGCTTCTGCAGAAGAAGAAAGTAACAGTCAAGTAATGGAGAATTACCCACCATGGTGGCTGGTACAAGGCCATAATCATCATCATCATCCTAAGCAAGAGCCACTGGTTGGTCTCATATCCAACTGA 1392 0.4167 MEEEEGRLVLKHVCKFCSKSFPCGRSLGGHMRSHITNNNVSAQEAEDNNKLTTATKKKTQSAFINGGAGGSSSKVVGEYDLRENPKKTSRFADSRSKEEETTALLVTEDKFCKECGKAFHSWKALFGHMKCHSEKSSINNNLENQDSVDAGHKFVTDSQSDNEGTGNNNNNPNRRRRSKRRRTRFVMTPASTSSVSFANNHASSSVSEVEQEQEEVAMSLMMLSRDMGHWGGLNSLFESSDNNSAYFEARSYVVPTNLSTKIEIAKGKITVSLATVSINETELDSSVKSNCKKGKFKCTTCNKIFHSYQALGGHRSSHKKLKGGCSASRNDQSSENSIETDLNNGYYVIEKQHQELIGSVNFENEEEIVKKNRVHECPICLKIFPSGQALGGHKRSHFAAEGSLVLEKPVQEIRDFLDLNLPASAEEESNSQVMENYPPWWLVQGHNHHHHPKQEPLVGLISN 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1402 463 ProSiteProfiles Zinc finger C2H2 type domain profile. 12 39 IPR013087 -
Alju13g1402 463 SUPERFAMILY beta-beta-alpha zinc fingers 111 318 IPR036236 -
Alju13g1402 463 Pfam C2H2-type zinc finger 374 397 - -
Alju13g1402 463 Pfam C2H2-type zinc finger 296 320 - -
Alju13g1402 463 Pfam C2H2-type zinc finger 12 34 - -
Alju13g1402 463 Pfam C2H2-type zinc finger 112 134 - -
Alju13g1402 463 ProSiteProfiles Zinc finger C2H2 type domain profile. 296 323 IPR013087 -
Alju13g1402 463 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Alju13g1402 463 ProSiteProfiles Zinc finger C2H2 type domain profile. 375 402 IPR013087 -
Alju13g1402 463 MobiDBLite consensus disorder prediction 185 208 - -
Alju13g1402 463 MobiDBLite consensus disorder prediction 154 208 - -
Alju13g1402 463 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 441 - -
Alju13g1402 463 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 137 IPR013087 -
Alju13g1402 463 ProSitePatterns Zinc finger C2H2 type domain signature. 377 397 IPR013087 -
Alju13g1402 463 ProSitePatterns Zinc finger C2H2 type domain signature. 298 318 IPR013087 -
Alju13g1402 463 Gene3D Classic Zinc Finger 293 397 - -
Alju13g1402 463 SMART c2h2final6 110 132 IPR013087 -
Alju13g1402 463 SMART c2h2final6 375 397 IPR013087 -
Alju13g1402 463 SMART c2h2final6 12 34 IPR013087 -
Alju13g1402 463 SMART c2h2final6 296 318 IPR013087 -
Alju13g1402 463 SUPERFAMILY beta-beta-alpha zinc fingers 12 38 IPR036236 -
Alju13g1402 463 Gene3D Classic Zinc Finger 9 132 - -
Alju13g1402 463 MobiDBLite consensus disorder prediction 154 172 - -
Alju13g1402 463 ProSitePatterns Zinc finger C2H2 type domain signature. 14 34 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1402 Alju-ChrAlju13 32699193 32700584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1402 370 427 C2H2 Transcription Factor Family AT1G26610 53.226 2.43e-13 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju13g1402 zf-C2H2_6 6.5e-11 CL0361