Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1374 ATGGAGCAACGAGATGAAAGCGCCTTGAACAACATCTCGGGTGATAAGCCACCGTCATCGCAAAATCCCTACGAAACACCGAGTAGTGCGACCAATGATGAGCCTGAAATTGTTAACCGTCAAGGACTTCCAGATTCTGAAACAACCAACGTCCATCATTCAGGTAATCCCACCATTAAGCCTGAAACCCAATCTTCCTCCCCTTCAAATCCTCAAAATCTAGATCCTCCTTCGCCTTCACTTCCACCGCCACCTAAAATTCCCAGCGAAGATGACGTTTCAAACCCTAAATTCACGTCAGTCCCTGGATCGCCTTCAAATTGCAGCGACGATGATTTCCCAATCAGCTATATGCCAGATCCCGGACCAGCAATACAAAACCCTCCGGTGCAGGTAATGGAACGAGCAGATCAAGAACCCGGCACACCGTCGGCATACAGGATTCCCTCCCATGTATTCGCTAGAACAAACACAGGCGCACCAGAATGGAGCTTACCGTCGAACGAATCGCTGTTTAGCATCCACATGGGGAATATGAGTTTCTCGAGAGAGCTGGAGTGGTTGAACAGCGAAATGTCAGGCGATCCTCTGCCACCATTAACCAGCGATAACAAAAATGGCGGGAACACAAATAATCAGACCCAAGGTAACAAGCCGAACGATCCAAGCACAGGTAATCATCAGAGCCAAGTGAACAATTTAAGCGATAAAAGCAAAACTGATCAGAGCCAAGTCAACAATCCGAACGATAATATAAGCACAAGTGTTGATCAAAGGCAGGCGAACAAGTTCAACGACATGAGCCAGATTGTAGGGAAGTTCCATCAAGATAGCGATGAAATGACTGAAGCAAGAGCTGCAGAGACAATGAGACAAGTTATAATGGAAAGCTCAGGCGATTATGCTTTGTCATGCGCTTCAGTGACGTCCCGTGCCGATGGATCTCATCACAATAATGCTAACGATGCCTCTCGTCATTCAGATTGCAGCGCCAAGTCTTTCGCCTTTAACCTATTTGAAGACGGCCAGAAGGAGGAAAGAGTCAGCGTTCTCCGAGAGGGTTTCAAGAGAGGCCAAAGCAGAAGACGCAGACGCAAACAGAGACAGGAACCCCAAAAGAATCATCAGAAGCATCAACTCAAACAACAAGGCCATCTTCAAATTCTCCTTGTAAATTGCTTTGTTGCTTCAATTGCTGCATTAAATAATGATATACTCTTAGCTTTATCAGAATTAATTCTTGAGTCATGGATCAAGGAGGAAATCAAACTTGCGGAAATAATACCTTATAATTTTCAAGCGCCTAAAACCATAGACAGCAAAAAGAGGATGGCGGAATCAGTTACCTCAGATGCGATTTCGATACTGCTTGCCAACCCCTCACCAGATTCTTCCTCGGAGCTTCCTGGGATCATCGTCCAAATTCTGGATCTCAAGCAAAGCGGTAACAGATTCATGTTCACTGCTAGCGATGGAAAGATGAAGTTAAGAGCAATCCTCCCTTCTAGTCAGAATTCCCAAGTCATTTCTGGAAGTATTCAGAATCTGGGTCTTATCCGCATTGTTGATTATACTCTCAATGATATCCCAAATAAGTCAGAGAAATATCTTATTGTTACAAAATGTGAATCGGTCTCTCCTGCTCTTGAAATGGAGATTAAAACAGAAGTCAAGAGTGAGCGCCCCGCTATGCTTTTGAATCCAAAGCAAGAGGGTGAAATCAAAAGCGAGGTGAAAAGTGAAGCTGCTGGCATTATTTTGAAACCAAAGAAAGAAATGGTGTCCAAATCTGCCGCTCAGATTTTACACGAACAACATACAAACACTGCCCCTACTGCACGGATGGCCATGACACGCAGGGTGCGCCCACTTGTTTCCTTAAATCCTTATCAGGGTAATTGGACGATAAAGGTTCGTGTAACAAGCAAAGGGAACATGCGCTCCTACAAGAATGCTAGAGGGGAAGGTTGTGTCTTCAACGTGGAATTGACAGATGAAGATGGCACTCAAATTCAAGCAACAATGTTTAATGAGGCTGCCAGGAAATTTTATGACAGATTTGCTCTTGGGAAGGTTTACTACATATCCAAGGGAACTTTAAAGGTTGCTAACAAACAGTTCAAAACTGTCCAAAACGATTATGAGATGACATTGAATGAGAATTCTGAGGTGGAAGAGGCAACTAATGAAGAAAGTTTTGTTCCAGAAACAAAATTTAACTTTGTCCTGATTGATCAGCTGGGTCCTTTTGTCAATAGGGGTGACCTTGTTGATGTCATAGGAGTTGTTCAGAACGTGTCCTCCACCATGAGCATTCGAAGGAAGAGCAACAATGAGACTATTTCAAAGCGTGATATTACTATTGCTGATGAAACAAAGAAGACAGTGGTTGTGTCTTTGTGGAGTGAACTTGCAACTAGTGTAGGGCAAGAATTGCTGGACAATGCTGATAAATCTCCAATTGTTGCAATCAAGTCTCTCAGGGTTGGGGATTTCCAGGGTGTTTCTTTGTCTACCATAAGCAGAAGTGTAGTTCTGATAAATCCTGATATATCTGAAGCAAATAAGCTTAGATGCTGGTATGAGTCTGAAGGTAAAGACGCTCCAATGGCTTCCATTGGCTCTGATGCATCTGTTACCAAAAATGGAATGAGATCAGTGTACACTGACCGTATATCACTAGCTCAAATAACCTCAAACAAATCCTTGGGAGAGGACAAGCCTGCATTTTTCAGCATCAGGGGACATATAAGCTCCATTAGGCCTGATCAGACAATGTGGTATAGAGCTTGTACAACTTGCAACAAGAAAGCCACTGAAGCCATTGGGTCTGGCTATTGGTGTGAAGGCTGTCAGAAAAATGTTGAAAGCACTTTAAGGTATATTTTGGTTGCAAGAGTTTCTGATGCAAGTGGTGAAGCTTATGTGTCGATCTTCAATAATGAAGCTGAGGAGATTGTTGGGTGTTCTGCTAATGAGCTAGATAGCCTAAAATCACGGGAGGGAGAAGATAATCCATACCAAATGAAATTGAAACAAGCGACTTGGACCCCTCATCTATTCCGTGTTAGTGTTTCCCAGAATGAGTATATGAACGAGAAGAGGCAGAGGATAACTGTCCGAGCTGTTGCTCCAGTTGATTATGCTGCTGAGTCAAGAATTCTCCTGGAAGAGATTTCAAAGATGACAGCTTCACAATAA 3201 0.4342 MEQRDESALNNISGDKPPSSQNPYETPSSATNDEPEIVNRQGLPDSETTNVHHSGNPTIKPETQSSSPSNPQNLDPPSPSLPPPPKIPSEDDVSNPKFTSVPGSPSNCSDDDFPISYMPDPGPAIQNPPVQVMERADQEPGTPSAYRIPSHVFARTNTGAPEWSLPSNESLFSIHMGNMSFSRELEWLNSEMSGDPLPPLTSDNKNGGNTNNQTQGNKPNDPSTGNHQSQVNNLSDKSKTDQSQVNNPNDNISTSVDQRQANKFNDMSQIVGKFHQDSDEMTEARAAETMRQVIMESSGDYALSCASVTSRADGSHHNNANDASRHSDCSAKSFAFNLFEDGQKEERVSVLREGFKRGQSRRRRRKQRQEPQKNHQKHQLKQQGHLQILLVNCFVASIAALNNDILLALSELILESWIKEEIKLAEIIPYNFQAPKTIDSKKRMAESVTSDAISILLANPSPDSSSELPGIIVQILDLKQSGNRFMFTASDGKMKLRAILPSSQNSQVISGSIQNLGLIRIVDYTLNDIPNKSEKYLIVTKCESVSPALEMEIKTEVKSERPAMLLNPKQEGEIKSEVKSEAAGIILKPKKEMVSKSAAQILHEQHTNTAPTARMAMTRRVRPLVSLNPYQGNWTIKVRVTSKGNMRSYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFALGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEATNEESFVPETKFNFVLIDQLGPFVNRGDLVDVIGVVQNVSSTMSIRRKSNNETISKRDITIADETKKTVVVSLWSELATSVGQELLDNADKSPIVAIKSLRVGDFQGVSLSTISRSVVLINPDISEANKLRCWYESEGKDAPMASIGSDASVTKNGMRSVYTDRISLAQITSNKSLGEDKPAFFSIRGHISSIRPDQTMWYRACTTCNKKATEAIGSGYWCEGCQKNVESTLRYILVARVSDASGEAYVSIFNNEAEEIVGCSANELDSLKSREGEDNPYQMKLKQATWTPHLFRVSVSQNEYMNEKRQRITVRAVAPVDYAAESRILLEEISKMTASQ 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1374 1066 Pfam Replication protein A OB domain 751 848 IPR031657 -
Alju13g1374 1066 FunFam Replication protein A subunit 620 729 - -
Alju13g1374 1066 Pfam Replication factor-A C terminal domain 910 1054 IPR013955 -
Alju13g1374 1066 MobiDBLite consensus disorder prediction 357 372 - -
Alju13g1374 1066 Pfam Replication factor-A protein 1, N-terminal domain 448 546 IPR007199 GO:0003677|GO:0005634|GO:0006260
Alju13g1374 1066 Gene3D - 620 729 IPR012340 -
Alju13g1374 1066 Gene3D - 734 873 IPR012340 -
Alju13g1374 1066 Gene3D - 447 555 IPR012340 -
Alju13g1374 1066 PANTHER REPLICATION FACTOR A 1, RFA1 634 1025 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Alju13g1374 1066 Pfam OB-fold nucleic acid binding domain 634 720 IPR004365 GO:0003676
Alju13g1374 1066 CDD RPA1_DBD_C 894 1061 IPR047192 -
Alju13g1374 1066 Gene3D - 874 1062 IPR012340 -
Alju13g1374 1066 SUPERFAMILY Nucleic acid-binding proteins 444 551 IPR012340 -
Alju13g1374 1066 MobiDBLite consensus disorder prediction 72 90 - -
Alju13g1374 1066 MobiDBLite consensus disorder prediction 1 145 - -
Alju13g1374 1066 SUPERFAMILY Nucleic acid-binding proteins 622 730 IPR012340 -
Alju13g1374 1066 FunFam Replication protein A subunit 447 557 - -
Alju13g1374 1066 MobiDBLite consensus disorder prediction 1 71 - -
Alju13g1374 1066 MobiDBLite consensus disorder prediction 93 111 - -
Alju13g1374 1066 FunFam Replication protein A subunit 733 872 - -
Alju13g1374 1066 CDD RPA1_DBD_A 623 726 - -
Alju13g1374 1066 MobiDBLite consensus disorder prediction 195 255 - -
Alju13g1374 1066 MobiDBLite consensus disorder prediction 352 380 - -
Alju13g1374 1066 NCBIfam replication factor-a protein 1 (rpa1) 446 1061 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Alju13g1374 1066 MobiDBLite consensus disorder prediction 190 255 - -
Alju13g1374 1066 FunFam Replication protein A subunit 876 1062 - -
Alju13g1374 1066 SUPERFAMILY Nucleic acid-binding proteins 739 867 IPR012340 -
Alju13g1374 1066 SUPERFAMILY Nucleic acid-binding proteins 888 1062 IPR012340 -
Alju13g1374 1066 CDD RPA1_DBD_B 756 862 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1374 Alju-ChrAlju13 32463362 32470202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1374 444 1066 Core DNA Replication Machinery Family AT5G08020 66.454 0.0 872