Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1357 ATGGGAAGAGGCAGAGTAGAGCTGAAGAGAATAGAAAACAAAATCAATAGGCAAGTTACATTCGCCAAGAGAAGAAATGGACTTCTCAAGAAAGCTTATGAGCTCTCTGTCCTCTGTGATGTTGAGGTTGCCCTCATCATCTTCTCCAATCGTGGCAAGCTCTATGAGTTCAGTAGTGACTCCAGCATGATGAAAACCCTGGAGAAGTATCAGAAGTACAACTATGATGCCCTGGAATCCAGCCAGCCAATGGGTGACACCCAGAGCGGCTATCAGGAATACTTGAGACTTAAAGCAAGGGTCGAAGTCCTGCAACGTTCACAGAGGAACCTTCTTGGGGAAGATCTGGCCCAAATGAATACAAATGAGCTGGAGCAGCTTGAGAATCAAGTTGAGGCATCACTGAAGAATATCAGGTCCACCAAGACTCAGTATATGCTTGACCAGCTTGCTGATCTTCAGAACCGGGAGAAAGAGCTGGGGGAAACTAATAGAGCTTTGAGGAGTAAGTTAGAAGAAAGAAGCAACTCGCAAGTTCCTCTAAGAATGGGTTGGGCAGGTGGAGGAGGGTCTGAGGCCATCCATTTCACTCGCTTTCCTGCTCATTCTGAAGCATTTTTCCAGCCTTTAGCAGTTAATCCCAATTTGCAAATCGGCAGATATAATCAGGTGGGAGGGGAAGAAGTAAATGATGGAGGAGCAGCCTTGAACGTTCATGGATTCTTGCCAGCTGGCAGTCAGAGAGGTAAAGAACAAGATCATCGGCAACCGAACCAAGAAGCTCTCTCCTATATCAAGCTCGGTGCAGTGTCCGTTGTCGCTTCTGTTCTCGCCGAACTTGACGCCAATTCTGATTCCGATGCCAACCTCATTGTCCAGTCTGCGGCGGTGCTAGGTAGTTTTGTCTGTGACGTTGAGGTTGGCGTACGTGCTGTCCTTGATGCCGGCATACGTGCCAACCTCATTGTCCACTGA 975 0.479 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDVEVALIIFSNRGKLYEFSSDSSMMKTLEKYQKYNYDALESSQPMGDTQSGYQEYLRLKARVEVLQRSQRNLLGEDLAQMNTNELEQLENQVEASLKNIRSTKTQYMLDQLADLQNREKELGETNRALRSKLEERSNSQVPLRMGWAGGGGSEAIHFTRFPAHSEAFFQPLAVNPNLQIGRYNQVGGEEVNDGGAALNVHGFLPAGSQRGKEQDHRQPNQEALSYIKLGAVSVVASVLAELDANSDSDANLIVQSAAVLGSFVCDVEVGVRAVLDAGIRANLIVH 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1357 324 Coils Coil 150 173 - -
Alju13g1357 324 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Alju13g1357 324 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju13g1357 324 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju13g1357 324 FunFam MADS-box transcription factor 1 13 87 - -
Alju13g1357 324 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Alju13g1357 324 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju13g1357 324 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju13g1357 324 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju13g1357 324 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Alju13g1357 324 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju13g1357 324 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Alju13g1357 324 Pfam K-box region 87 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju13g1357 324 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Alju13g1357 324 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 179 - -
Alju13g1357 324 Coils Coil 117 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1357 Alju-ChrAlju13 32284978 32290389 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1357 1 219 MADS-box Gene Family AT5G15800 62.054 2.68e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju13g1357 K-box 8.8e-27 No_clan