Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1356 ATGGGGAGGGGAAGAGTACAGCTAAAGAGGATCGAGAACAAGATCAACAGACAAGTGACTTTCTCAAAGAGGAGATCTGGTTTGCAGAAGAAAGCCCATGAAATCTCTGTCCTTTGTGACGCAGAGGTTGCTCTCATCGTCTTCTCCACCAAGGGCAAGCTCTCTCACTACTCCAGCGACCCCTGCATGGAAAAAATTATTGAACGCTATGAGAGGTATTCATATGCAGAAAAGCAGCTAGCTGCAACTGATCGTTCACCAACTGAAAATTGGACTCTAGAGCACGCAAAGCTTAAGGCTAGGATGGAGGTCCTGCATAGAAATCAAAAGCATTATATGGGAGAAGATCTGGAAGGCCTAAGTGTCAAAGAGCTTCAGAATTTGGAGCATCAACTAGACAGTGCTATCAAACACGTCAGATCGCGCAAGAACCAACTCATGTATGAATCAATTTCTGAGTTTCAGAAAAAGGATAAGAAGCTGCAGGAACAAAACAACTTGCTGGCTAAGAAGATAAAAGAGAAAGAGAAGGCCATGGCCCAAAAGGCACGCGAGGAAAACCAAAATGATGAAGGAAATGATTATGGTGCCCTCGTACAACCACAATTACCACCCTCCAATATTGGAGAACCCGTAGGAGCAAGGGGTTGTGCAGAAGATAACGAAGCAAGGACGACTCATCAGCCTCGGTCTGGCCCGTTGCTTCCCTCGTGGATGCTTTCCCCCATCAAAGCAGCGGATGCATTTTTCTTCGGCGACGAAGACGTATTCCGCACTTGGTCGAGCTCGCCGTTGGATGCCGTTCACCGTTGTCAGCCCCGGGTGGTTGTTCTCGGGCCAGTGTTGAAGAAGTGGCTTGGAAGAGTTGTCTGA 873 0.4765 MGRGRVQLKRIENKINRQVTFSKRRSGLQKKAHEISVLCDAEVALIVFSTKGKLSHYSSDPCMEKIIERYERYSYAEKQLAATDRSPTENWTLEHAKLKARMEVLHRNQKHYMGEDLEGLSVKELQNLEHQLDSAIKHVRSRKNQLMYESISEFQKKDKKLQEQNNLLAKKIKEKEKAMAQKAREENQNDEGNDYGALVQPQLPPSNIGEPVGARGCAEDNEARTTHQPRSGPLLPSWMLSPIKAADAFFFGDEDVFRTWSSSPLDAVHRCQPRVVVLGPVLKKWLGRVV 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1356 290 Coils Coil 125 145 - -
Alju13g1356 290 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju13g1356 290 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju13g1356 290 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Alju13g1356 290 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Alju13g1356 290 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Alju13g1356 290 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Alju13g1356 290 Coils Coil 151 193 - -
Alju13g1356 290 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju13g1356 290 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju13g1356 290 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju13g1356 290 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju13g1356 290 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju13g1356 290 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Alju13g1356 290 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 170 - -
Alju13g1356 290 MobiDBLite consensus disorder prediction 175 194 - -
Alju13g1356 290 MobiDBLite consensus disorder prediction 175 191 - -
Alju13g1356 290 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1356 Alju-ChrAlju13 32267115 32275920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1356 1 182 MADS-box Gene Family AT1G26310 65.761 5.38e-85 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju13g1356 K-box 3.2e-28 No_clan