Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1353 ATGCAGGAAATACATTCTATCGGGGGTGGTAGATTTTTCGACAGCGGTGGCGGTGGAGCTGGCGGCGGAGACAGGAGAGTGAGGCCGCACCACCACCAGAACCAGCAGGCCTTGAAGTGCCCGAGGTGTGACTCCCTCAACACCAAGTTCTGTTACTACAACAATTACAATCTCTCTCAACCCCGCCATTTCTGCAAGAGCTGCCGGCGGTACTGGACCAAAGGCGGCGTCCTACGCAACGTCCCCGTCGGCGGTGGATGTCGTAAATCCAAGCGTTCGAAGCCCAAAACATCATCCTCTGCAGAACGTCCTCTCACGCCGACACGACCACCGGCGCAGTCGCCGCCGCCGCAGGAGAACCGTAAGTCGAGCTCTCATTCCAGCAGCGAAAGCTCCAGCCTCGCCGCCACCGCCGCCTCTGAAGCGGTATCGGCGCCTTCGTCGTTGAACCGTGAGCTGCTAACCAATCAGGCTACGAACCCTAATTCGGAGTCTGGATTGATGGAGCAAGGAGGGGACTGCGGTATTTTCTCGGAGATAGGGAGCTTTACAAACCTGATCACTGCAACAAGCGAAGCATTGTCGTTCGGATTCGGGAATATTCCGGAGCCGACGTCGTTTCGGTTCGGTACTACCACTCAACAAGAAGGGATGGCCGGGAATGAGTTATTATCCGGGGAGTGGCAGCAGGCACAGCAGAAAGAGACGGGGATGAGTGACATGATTTCTCAGCAGGAGTTGAAGTTGCCGGAGCTCATGCCTGGGTCGTTGCTCGACCCGACGGTGCCGGTGGATTTGTCGGCGTTGCAGAGTAAGTGCGAGACCGGTGGTTTGGGACCGTTGGATTGGCAGGGAGGCGCAGAGCAAGGTTTGTTTGATCTACCTAACAGCGTAGATCATTCTTACTGGAGTCACACTCACTGGACTGATCAAGAAAATCCCAGTCTCTTTCATCTTCCTTGA 963 0.5587 MQEIHSIGGGRFFDSGGGGAGGGDRRVRPHHHQNQQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKSKRSKPKTSSSAERPLTPTRPPAQSPPPQENRKSSSHSSSESSSLAATAASEAVSAPSSLNRELLTNQATNPNSESGLMEQGGDCGIFSEIGSFTNLITATSEALSFGFGNIPEPTSFRFGTTTQQEGMAGNELLSGEWQQAQQKETGMSDMISQQELKLPELMPGSLLDPTVPVDLSALQSKCETGGLGPLDWQGGAEQGLFDLPNSVDHSYWSHTHWTDQENPSLFHLP 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1353 320 ProSitePatterns Zinc finger Dof-type signature. 40 76 IPR003851 GO:0003677|GO:0006355
Alju13g1353 320 MobiDBLite consensus disorder prediction 1 37 - -
Alju13g1353 320 Pfam Dof domain, zinc finger 36 92 IPR003851 GO:0003677|GO:0006355
Alju13g1353 320 ProSiteProfiles Zinc finger Dof-type profile. 38 92 IPR003851 GO:0003677|GO:0006355
Alju13g1353 320 MobiDBLite consensus disorder prediction 118 150 - -
Alju13g1353 320 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 30 212 IPR045174 GO:0003700|GO:0006355
Alju13g1353 320 MobiDBLite consensus disorder prediction 82 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1353 Alju-ChrAlju13 32253623 32254585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1353 24 317 C2C2-Dof Transcription Factor Family AT5G60850 40.705 5.05e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Alju13g1353 zf-Dof 2.5e-33 No_clan