Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1347 ATGTCGTTTGTTCCGAGCTCCCCTAATAAACGACGTAGAACCCAAGACCAGGAGGATTCCGATCATAACCACCACCTACCACCTTCATTCACGGACGACCAGCCTGATTCTTGTGGAATTTGCTACGCCGACCATGACTCTTCAATTAGAGGTGAAATTGATTGTTGCACTCACTTTTTTTGCTTCGTCTGCATCATGGAATGGTCCAAGCATGAGTCCCGATGCCCCCTCTGTCGTCAAAGATTCTCCGCCGTTCGCCGCCCCCCTAAGCCCGGCGTCTTCCCTTCCTCGCGTCTCGTTAAAGTCCCAATTCGTGATCAGGTTTACCACGTTCGTGGAAATATCACAACAGGTCCTGCGGATCCTTATGCCGAAACTAGGTGTAGTGTCTGTAATGGTGGGGAAGATGAAAGTTATCTTCTACTATGTGATCTTTGTGATACCGCTTCTCATACATATTGTGTTGGCCTTGGATATGTTGTGCCTGAAGGTGATTGGTTTTGCCAAGATTGTACTGTTTCCAGGTCAATTAATGACAATCACAATGTAGACCATCAATGTGACATGCCTACAGCTGAATCGAGTGTAACAATCCTTGATATTGTGAGAGAACCAAACAGCCAGATGGTCCAAAGATCAAGACCGTCTCCTCTTGTTACCCCTCTGCCTGATAGGGTCAGTAGAAGCAAAGAAAGGAATCGTGACATAAGTGTTACACCTTTACCTCTGAGGGTGAATAGAAACAAAGATAGAAATCGTGACATAAGTGCTCGGACATTGCGCAAATGCCGTAACGTGCAACGTAATATACAAGCTTTGCGTCAAAATTGGAATGCCTTGAGAAATGGCTCGTTAAGGTTCTCTACAGCTCCTTCTGAATCCGTTGTCAGGCATTATAAACAACAGAACACTGATTTCTTACCTAGTGGAAAGTCAAATCAACTGCATTCTTCAGCTTCCACAAGCCTTCAGCAATCTATAATTCAAAGTGGCCCTTCTAATTACAAATTGGATGAGAGTGGCTCAGAGGATGTGAACAAGGCTTGGAAAATGCTGGAGAGAGCAAGGATGATGGAAAAGACTAATAATCATAAGGGCAGCATCCTTCCACAGGGATTAAGTCACCCTTCAAGAGTTGTAGGACCTAGAAAAGCACCAGGAAATCATTGTAATGAACAAGGATTGAAGATTCATCAATCAGGAAGATCCACAGGAAATGAGAAGCGATACCGCTTTTCTAGTTTCAATAAGGATATGAACAATTGCCGGCCTCTAGAGTCGGGAGGGAAAAAGCATAGTGGGGTCACACATAACGTGACAACACCAAATATTAGGGACCAAGCTTCTCATTTAGAAGAATGCTGTGAACCTTCATTGCCTAGTAAAATGCCAAGTAGCATTCTATGTGTTCCCAGACATGAAAACGAAGAAAGAAATTTTGCTAAGGAACAAAGCAGGTCTTCTTGTTTAGTAACTTCAGTGGATTCTGCTCCTTCTGATGGCAAGATTGGAAGTGTGTCTTCCTCAAGCATGATTGAAGGTGAAAAAAAGCGATTGTCTAAAAGCTTTGGGCATGCAAACACACAAGACAATGAAGATGTTAAAAATGAGATCAAGTCTCTTGTCAAGCTCAACCTGAAAATCCTCAGTAAAGATAAACGACTAGGTGTTGATGCATTCAAGGAAATTGCTAGGCACTCAACCCACGCTATCTTAGCTGTCTGTCAATCGGAGCAAGAAAAGCTGGGGGCAAGCTCGTCGAGCTCTTTATGCAGTCACGGGGGCGATCAGGAGCATTTGCACAAGTCCACCTTAATGCCTAATTGTTGCCGACAATGTTTTTACATGTTTGTCAAGAATGTAGTCAGCTCCACTACGATGGAGAAGGTAGGTGGGGGTGGATCTTCATCTTCCTGA 1917 0.4392 MSFVPSSPNKRRRTQDQEDSDHNHHLPPSFTDDQPDSCGICYADHDSSIRGEIDCCTHFFCFVCIMEWSKHESRCPLCRQRFSAVRRPPKPGVFPSSRLVKVPIRDQVYHVRGNITTGPADPYAETRCSVCNGGEDESYLLLCDLCDTASHTYCVGLGYVVPEGDWFCQDCTVSRSINDNHNVDHQCDMPTAESSVTILDIVREPNSQMVQRSRPSPLVTPLPDRVSRSKERNRDISVTPLPLRVNRNKDRNRDISARTLRKCRNVQRNIQALRQNWNALRNGSLRFSTAPSESVVRHYKQQNTDFLPSGKSNQLHSSASTSLQQSIIQSGPSNYKLDESGSEDVNKAWKMLERARMMEKTNNHKGSILPQGLSHPSRVVGPRKAPGNHCNEQGLKIHQSGRSTGNEKRYRFSSFNKDMNNCRPLESGGKKHSGVTHNVTTPNIRDQASHLEECCEPSLPSKMPSSILCVPRHENEERNFAKEQSRSSCLVTSVDSAPSDGKIGSVSSSSMIEGEKKRLSKSFGHANTQDNEDVKNEIKSLVKLNLKILSKDKRLGVDAFKEIARHSTHAILAVCQSEQEKLGASSSSSLCSHGGDQEHLHKSTLMPNCCRQCFYMFVKNVVSSTTMEKVGGGGSSSS 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1347 638 Pfam PHD-finger 127 173 IPR019787 -
Alju13g1347 638 MobiDBLite consensus disorder prediction 364 383 - -
Alju13g1347 638 MobiDBLite consensus disorder prediction 388 407 - -
Alju13g1347 638 PANTHER F18C1.6 PROTEIN 18 629 - -
Alju13g1347 638 Coils Coil 256 276 - -
Alju13g1347 638 CDD RING-HC_Topors 35 82 - -
Alju13g1347 638 SUPERFAMILY FYVE/PHD zinc finger 120 175 IPR011011 -
Alju13g1347 638 ProSiteProfiles Zinc finger RING-type profile. 38 79 IPR001841 -
Alju13g1347 638 MobiDBLite consensus disorder prediction 1 31 - -
Alju13g1347 638 ProSiteProfiles Zinc finger PHD-type profile. 125 174 IPR019787 -
Alju13g1347 638 MobiDBLite consensus disorder prediction 393 407 - -
Alju13g1347 638 MobiDBLite consensus disorder prediction 207 240 - -
Alju13g1347 638 ProSitePatterns Zinc finger RING-type signature. 56 65 IPR017907 -
Alju13g1347 638 SUPERFAMILY RING/U-box 37 93 - -
Alju13g1347 638 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 97 IPR013083 -
Alju13g1347 638 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 186 IPR013083 -
Alju13g1347 638 MobiDBLite consensus disorder prediction 491 511 - -
Alju13g1347 638 Pfam Ring finger domain 36 79 IPR001841 -
Alju13g1347 638 SMART PHD_3 127 172 IPR001965 -
Alju13g1347 638 MobiDBLite consensus disorder prediction 11 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1347 Alju-ChrAlju13 32193234 32195611 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1347 104 177 C2H2 Transcription Factor Family AT3G01460 29.333 8.27e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Alju13g1347 PHD 9e-10 CL0390