Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1341 ATGGACTATTTTGGTAGCTATCCTAGTAATTGGGTACGCCTCTGTGACTCTTGCAGGTCGTCTGCTTCCACTCTTTACTGTCACACTGATTCAGCGTACCTCTGCTCTTCCTGCGATGGACAAATTCACGCACTGGGGTCTCCTGGTTGGCCCCACCATCGTGTGAAACTTTGCGGCGCGTGTGAGAACGCTCCGGTGGCTTTTACCTGCAAGGCCGATGATGCTTCGCTGTGTGTCAACTGTGACTTTGAAATTCACTCTGCTAACCCAATCGCTAGCCGACACAACAGGGTCCCTGTTTCTCCCCTGCCTCATATACTCAACGACAACGTGGAAACACCCGACGAGCAGCCTAATTACGAGGTTGTCGACAACAGAAACAACAACAACATAAGTAGCAAGCAAATGGACGAGCGAGAAGCTGACTCGTGGTTACTGCTTGGTTCTGCTGATATCATAGACAGCCAGATTGATGATGGGTTTATGTTCGGAGAAACAGAGGATGATCACCATGCGTATGTGGGGCTTATTGAAGAGTGTGATTCATCCACAAAGTTCACAAATTTCCAGGAAGGTCATGATCAGGGGCAACAAACTTACAGCTTCTCTGAAGAGATGAACGAAAGTGACAGTGTTGTGCCTGTTCAATCGGTTGAAGATGATCAGCCTAATAAGCAATTGCAGCCTCCACAACAGCAGCAGAATATCCACTTCAATATGGAGCAAAAGCCATCATCAAGAGTGGAATTCACTAATTACGCCTCGGATTGCCGGAGCGTAGCTGTTCCATATATGGTTGCTCAAATGCTGCAGAGAGGGACGATGAGTGAGATGCAAGGGTACAGATTTCTCCAAGGAACAGGAACAGAGATATTTCCAAGTGCTTCATCAGTTCCAATGCAAATCCACTTTGGGCAGATGAACAGGAAAGCTGGAGTGGAAAAATACAGAGAGAAGAAGAAATCTAGAAAGTTCGAGAAGAGAATCAGATATGCTTACAGGAAAGCCTATGCTGAGAAACGACCCAGAGTTAAGGGTAGATTTGTTAAGAGACAAGACTTAACCTCAGATGAAGCTGTGCCTCTCCATTGA 1092 0.4652 MDYFGSYPSNWVRLCDSCRSSASTLYCHTDSAYLCSSCDGQIHALGSPGWPHHRVKLCGACENAPVAFTCKADDASLCVNCDFEIHSANPIASRHNRVPVSPLPHILNDNVETPDEQPNYEVVDNRNNNNISSKQMDEREADSWLLLGSADIIDSQIDDGFMFGETEDDHHAYVGLIEECDSSTKFTNFQEGHDQGQQTYSFSEEMNESDSVVPVQSVEDDQPNKQLQPPQQQQNIHFNMEQKPSSRVEFTNYASDCRSVAVPYMVAQMLQRGTMSEMQGYRFLQGTGTEIFPSASSVPMQIHFGQMNRKAGVEKYREKKKSRKFEKRIRYAYRKAYAEKRPRVKGRFVKRQDLTSDEAVPLH 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1341 363 MobiDBLite consensus disorder prediction 112 136 - -
Alju13g1341 363 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 15 353 IPR045281 GO:0009909
Alju13g1341 363 ProSiteProfiles CCT domain profile. 309 351 IPR010402 GO:0005515
Alju13g1341 363 Pfam CCT motif 309 351 IPR010402 GO:0005515
Alju13g1341 363 SMART bboxneu5 53 100 IPR000315 GO:0008270
Alju13g1341 363 SMART bboxneu5 10 48 IPR000315 GO:0008270
Alju13g1341 363 Pfam B-box zinc finger 55 100 IPR000315 GO:0008270
Alju13g1341 363 Pfam B-box zinc finger 13 55 IPR000315 GO:0008270
Alju13g1341 363 CDD Bbox1_BBX-like 57 100 - -
Alju13g1341 363 CDD Bbox1_BBX-like 14 55 - -
Alju13g1341 363 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Alju13g1341 363 ProSiteProfiles Zinc finger B-box type profile. 10 57 IPR000315 GO:0008270
Alju13g1341 363 MobiDBLite consensus disorder prediction 112 132 - -
Alju13g1341 363 MobiDBLite consensus disorder prediction 204 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1341 Alju-ChrAlju13 32124424 32126140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1341 11 351 C2C2-CO-like Transcription Factor Family AT3G02380 40.058 1.48e-65 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Alju13g1341 zf-B_box 6.6e-07 No_clan