Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1319 ATGGATCAGCCCCCTGGTAGACGCAGCTTGAAGCGCAATCGCAAACAAGAATTCACGGAAGAAGGAGCAGTTTATCCTACGACCGATCGTAAAGTGTTGGCTCTCGAACCTAAACAGTCTCATCAAGATCTCTTGAGTGAAGTTGTGGCGCAAGTCACTATTCTCAACTCCAGTTTATCATCGTCTCAGTCGGATCGCCTCGCAGCCAAGCGCGCTGCTCATCTTCTCTCTGAACTCGCCGAGAATGAGTTAATTGTGGACAGTATAGTGGACTGTGGAGTCGTTCCTGCTTTGTTAACACATCTGAAAGCGCCAGAACCAGGTGTTACCAAGCCTTACGAGCATGAGGTGGAAGAGGGATGTGTCTTGGTCCTTGTCCTTCTTGCTATGAAACGCCCACAGCATCAACAACTCATTGCGGATGCTGGAGCTTTGGCATATCTTATGGATTTGTTAAAAAGCTACAAGACCTGTGGCAATTCATCAGCACTTACTAGCCTTTTAAGGAGCGCAGCTAAGGCCATTAAAAGCCTTGCGGTCGGAAATAGCAGCATTAAAACCCGTGTTGGGAAGGAAGGCGGCATCCCTCCTCTTGTTGAATTGTTTGGATCTGATGATGCAAAGCTACAAAGTGCAGCTGCAGGAGCCTTTGGTAGTCTTGCATTCAAAAATGATGAGAACAAAAACCAGATTCTCAAGTTGAATGTACTGCCTACTCTTGTAGTAATGCTTGGATCAGAGGATGCTACAATACATTGTGAAGCAGTTACCGCGATTTCAAATCTGGCCACTTATTCTCCAAACATAACTACCAAAGTTCTTCAAGCTGGTACTCTGCAACCGGTGATTATATTGCTTAGATCTTGCTGTTCCGACAGTCAAAGAGAAGCAGCTCGTTTAATTGGTGTATTTGCTAGGACAGGTTCTGCTTGCAAGGTTCACATTGCTCAAAGAGGGGCTATCCCGCCACTGATTGACATGCTTAAGTCTCCAAATGCAGAGCATCGAGAAATGTCAGCTTTTGCAATTTCAATACTTGTTGAGGACCCACACAATCAAGTTGGTATTGCTTATAATGGGGGTACAGAGCCTTTACTCAACCTTCTTTCCTCCAAGAGTAAAAGTCTCCAAAGTAATGCTGCCTTTTCTGTATACTATCTTGCTGATAATGAGGACAATGTTGCGGATATTGTTAAGTTTGGCGGTGTTCAAAAACTATTGGATGGAAATGTAACAGCTAAATCTGCTAAAAAGTCTGTAGGAAGTACAATGAAATTATTAAAGGGAAAAATGCATGGACGAGTGCTGAAACAACTGTTGTATCTTATGCGTTTTGGAGAAAAGGCTGTACAAAGGCATGTGGCTCTGGCTCTTGCTCATTTATGTGCCCCTGATGATCAGAAATTTATTTTTCTTGACAACAATGGAATTGACTTACTGCTAGATCTTCTAACATCTAGAAACCTCGATCAAAAACGCGAGGCTTCAATGGCACTTCACTCTTTGGCTATCAGAGCCACATCTATCTCTCCCTTAGATGCTACTCCTTCATCCACGGCTCCCCAGGTTTACTTATGCGAGCAATATGTAAACAATCCTACACTTTCTGATGTCAGCTTTTTAGTTGAAGGAAAACGGTTCTGTGCTCATCGAATTTCTTTACTTGCTTCCTCGGATGCGTTTCGAGCAATGCTTGATGGTGTTTACCGGGAGAAGGAAGCGAAAGATATACCGATTCCAAACATTAAATGGGATGTCTTTGAATTGATGATGAGATTTATTTATACGGGAACTGTAGATGTCAACTTGGATGTTGCTCAGGATCTCCTGAAAGCTGCTGACCAGTATCTTCTGGATGGTCTTAAACGGTCCTGTGAATGTGTAATAGCTCAGGATATTTCCTTGGGAAATGTTTCTCAATTGTACGAGCTATCAGAGTCAATCCATGCTATGTCATTGAGGCGAGCATGTATATTGTTTTTGTTGGAGCAATTTGACAAATTGAGTGTCAAACCTTGGTATAGCCGCCTGATGAGTCGCATCATCCCAAATGTAGTCGAATTTTTCAGAAGTTTGCTTACCAGTGGAATAGATAAGAAATAA 2103 0.4284 MDQPPGRRSLKRNRKQEFTEEGAVYPTTDRKVLALEPKQSHQDLLSEVVAQVTILNSSLSSSQSDRLAAKRAAHLLSELAENELIVDSIVDCGVVPALLTHLKAPEPGVTKPYEHEVEEGCVLVLVLLAMKRPQHQQLIADAGALAYLMDLLKSYKTCGNSSALTSLLRSAAKAIKSLAVGNSSIKTRVGKEGGIPPLVELFGSDDAKLQSAAAGAFGSLAFKNDENKNQILKLNVLPTLVVMLGSEDATIHCEAVTAISNLATYSPNITTKVLQAGTLQPVIILLRSCCSDSQREAARLIGVFARTGSACKVHIAQRGAIPPLIDMLKSPNAEHREMSAFAISILVEDPHNQVGIAYNGGTEPLLNLLSSKSKSLQSNAAFSVYYLADNEDNVADIVKFGGVQKLLDGNVTAKSAKKSVGSTMKLLKGKMHGRVLKQLLYLMRFGEKAVQRHVALALAHLCAPDDQKFIFLDNNGIDLLLDLLTSRNLDQKREASMALHSLAIRATSISPLDATPSSTAPQVYLCEQYVNNPTLSDVSFLVEGKRFCAHRISLLASSDAFRAMLDGVYREKEAKDIPIPNIKWDVFELMMRFIYTGTVDVNLDVAQDLLKAADQYLLDGLKRSCECVIAQDISLGNVSQLYELSESIHAMSLRRACILFLLEQFDKLSVKPWYSRLMSRIIPNVVEFFRSLLTSGIDKK 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1319 700 Gene3D - 203 526 IPR011989 -
Alju13g1319 700 Gene3D Potassium Channel Kv1.1; Chain A 527 670 IPR011333 -
Alju13g1319 700 SUPERFAMILY POZ domain 527 629 IPR011333 -
Alju13g1319 700 SUPERFAMILY ARM repeat 59 406 IPR016024 -
Alju13g1319 700 SMART BTB_4 536 633 IPR000210 GO:0005515
Alju13g1319 700 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 235 277 IPR000225 GO:0005515
Alju13g1319 700 MobiDBLite consensus disorder prediction 1 19 - -
Alju13g1319 700 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 360 402 IPR000225 GO:0005515
Alju13g1319 700 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 193 228 IPR000225 GO:0005515
Alju13g1319 700 Gene3D - 39 202 IPR011989 -
Alju13g1319 700 Pfam BTB/POZ domain 528 630 IPR000210 GO:0005515
Alju13g1319 700 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 4 695 IPR044282 -
Alju13g1319 700 ProSiteProfiles BTB domain profile. 536 603 IPR000210 GO:0005515
Alju13g1319 700 MobiDBLite consensus disorder prediction 1 23 - -
Alju13g1319 700 SMART arm_5 132 180 IPR000225 GO:0005515
Alju13g1319 700 SMART arm_5 308 348 IPR000225 GO:0005515
Alju13g1319 700 SMART arm_5 266 306 IPR000225 GO:0005515
Alju13g1319 700 SMART arm_5 464 504 IPR000225 GO:0005515
Alju13g1319 700 SMART arm_5 224 264 IPR000225 GO:0005515
Alju13g1319 700 SMART arm_5 82 129 IPR000225 GO:0005515
Alju13g1319 700 SMART arm_5 182 222 IPR000225 GO:0005515
Alju13g1319 700 SMART arm_5 349 389 IPR000225 GO:0005515
Alju13g1319 700 SUPERFAMILY ARM repeat 435 505 IPR016024 -
Alju13g1319 700 Pfam Armadillo/beta-catenin-like repeat 189 221 IPR000225 GO:0005515
Alju13g1319 700 Pfam Armadillo/beta-catenin-like repeat 224 263 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1319 Alju-ChrAlju13 31936536 31941670 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1319 312 436 U-box Gene Family AT5G40140 36.000 1.86e-12 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Alju13g1319 BTB 9.1e-23 CL0033