Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1308 ATGTCGTCATCAAGTGGAATCGTTTGGAGCTATGAAGAAGAAAAGGCCTTTGAGAATGCCATCGCAATGCATTGGGTTGAAGAAGAGTCAGAAGAACAATGGGAGAAGATTGCATCAGCTGTACCCAGCAAAAGCATGGAAGAATTGAAACAACATTACAAATTGTTATTAGAAGATTTAAGTTCAATAGAGGCAGGCCATATTCCACTTCCAAACTATACTGGTGGTGGTGGAGAAGAAGCTACTTCTTCAAGCAAGGAATTGCATGCTTCTTCTTCCAAAGCTTCCACCTCAGAAAAAAGATCTAATTGCAATTTAAGAACTGGGATTTCTGGGTTGGGACATGAATCTTCTGGCCATACTGCTAAAGGAGGCTCTTCAAGATCTTCAGAACAAGAAAGGCGAAAAGGAATTCCCTGGACAGAAGAAGAGCATAGGCTATTTCTACTTGGTCTTGACAAATTTGGGAAGGGAGATTGGAGGAGCATATCAAGGAACTTTGTGATGTCAAGGACTCCAACTCAAGTGGCAAGTCATGCACAGAAGTATTTTATAAGGTTGAACTCCATGAACAGAGATAGGAGGAGGTCAAGTATCCATGACATAACAAGTGTGAACAATGGGGATGTGGCTAATAACCAGGCACCAATAACAGGGCAACACACAAACACAAACCCATCAAGCACAATGGGTGTAGGACAGTCTGTGAAACATAGGGCTCATCAACCCCATATACCTGCTGGTATTGGCATGTATGGGGCACCATTAGGGCACCCTGTGGCTGCTGCTCCTGGTCATATGGCTTCTGCTGTAGGAACCCCTGTTATGATGCCTCCTGGACACCATCCTCATCCTCATCCTCCTTATGTTGTTCCAATGGCTTACCCTATGGCATCTCCAACAATGCACAGATGA 915 0.4404 MSSSSGIVWSYEEEKAFENAIAMHWVEEESEEQWEKIASAVPSKSMEELKQHYKLLLEDLSSIEAGHIPLPNYTGGGGEEATSSSKELHASSSKASTSEKRSNCNLRTGISGLGHESSGHTAKGGSSRSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVMSRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVANNQAPITGQHTNTNPSSTMGVGQSVKHRAHQPHIPAGIGMYGAPLGHPVAAAPGHMASAVGTPVMMPPGHHPHPHPPYVVPMAYPMASPTMHR 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1308 304 CDD SANT 9 57 IPR001005 -
Alju13g1308 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 132 188 IPR017930 -
Alju13g1308 304 ProSiteProfiles Myb-like domain profile. 132 184 IPR001005 -
Alju13g1308 304 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Alju13g1308 304 Pfam Myb-like DNA-binding domain 139 184 IPR001005 -
Alju13g1308 304 SMART sant 136 186 IPR001005 -
Alju13g1308 304 SMART sant 5 59 IPR001005 -
Alju13g1308 304 NCBIfam myb-like DNA-binding domain, SHAQKYF class 136 186 IPR006447 GO:0003677
Alju13g1308 304 SUPERFAMILY Homeodomain-like 9 64 IPR009057 -
Alju13g1308 304 CDD SANT 139 184 IPR001005 -
Alju13g1308 304 FunFam Transcription factor SRM1 1 70 - -
Alju13g1308 304 FunFam transcription factor MYB1R1 138 189 - -
Alju13g1308 304 Gene3D - 138 190 - -
Alju13g1308 304 MobiDBLite consensus disorder prediction 71 139 - -
Alju13g1308 304 Gene3D - 2 70 - -
Alju13g1308 304 PANTHER TRANSCRIPTION FACTOR KUA1 5 299 - -
Alju13g1308 304 ProSiteProfiles Myb-like domain profile. 9 57 IPR001005 -
Alju13g1308 304 MobiDBLite consensus disorder prediction 77 126 - -
Alju13g1308 304 SUPERFAMILY Homeodomain-like 134 189 IPR009057 -
Alju13g1308 304 ProSiteProfiles SANT domain profile. 140 188 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1308 Alju-ChrAlju13 31798325 31799472 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju13g1308 Myb_DNA-binding 1.6e-05 CL0123