Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1296 ATGGCTTCTCCCTCTGAACTAAGCCTGATGGATTGCAAACCCCACAGCTATTCTTTGCTTCTGAAATCATTTGGAGATCAGGCAGATCATACCTACAAGCTTGAGGACTTCCTTTCTCGCCTCGAGGAAGAACGTCTCAAGATTGATGCCTTCAAGCGCGAGCTTCCTCTCTGCATGCAGCTCCTCACCAACGCTATGGAGGCATCAAGGCAGCAACTTCAGGCCTACATAGCAAATGAAGGCACCACGAGGCCAGTGCTAGAAGAATTCATACCCATAAAGCAATCAACCTCTGAAATCTCTGAGAAGGCACCCAACATAGCAGACAATAAGGCAAATTGGATGACATCTGCTCAATTATGGAGTAGCCAAGCAAATGAAGGAACCAAGCCCCAATCCACAATCATCACATCCCCTACTAAAGAAGCTGAAATTGGTTTCAGTGTGAGCCCTAAGCTCGCTCTACTTGACAACAAACAGAGGAATGGTGGAGGAGCCTTCCTACCATTCTCAAAAGAAAGAAACTCATCATCATCATGCCAAAGTAATAACCCCACATTACGGGTCATCCCAGAGTTGGCCCTAGCCTCCGTTGAGAAAGAAATTATGGAGGATAAGAAATGCACCGAACCAGAAAATAATGCAGTGTCATGTCCCAAGAGGGAAAATTCCGGTAAAGCCTCAGGATCAGGCAACTGTACTGTGGTCACTGATCAAGGAAAAGGAGCTCCATCAGTTGCATCTGATCCACAAACAACCACCACCACCACTAACCAAACTCATCGGAAGGCAAGAAGATGCTGGTCACCTGACCTGCACCGCCGATTTGTAAATGCTCTTCAGATGCTAGGTGGATCTCAAGTGGCTACCCCGAAGCAGATAAGGGAGCTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATCTCCAGAAATATAGGCTTCATACCCGACGTCCCAGTCCAAGCCCACAAGCAGCCGGCTCACCCGCACCGCAGCTCGTAGTTTTGGGAGGAATCTGGGTCCCAGCGGAATACGCTGCCGCCGCCGCTCACACTGGCGCACCCACCATCTATAGCCCGCACCCTACCTCCCACGCGCCACCGCCGCCACCGCACTACTGTTCCGCAACGCCGGTGCACCAAGAGTTCTACGCAGCCGCGGCGGCACCGCAGCCAGCTCCTCCGCACTACCAAACGCTGCTCCATCACCATCTGCAGATGTACAAAACGAATTCGTCGCACCAGGGCCCGCCGGAATCGGAGATGCGAGGAGGGGGAGAGAGGTCGGAGAGTATAGAGGACGGGAAATCGGAGAGCAGCAGCTGGAAGGGAGAGAGTGGGGAGAACGAAGGGAAGAGAAAAGGGCTGGCAGCACTGAGAGAAGAAGGAGAAGAGAGTAGTCGGAGCGAGACGACTCTAAAATTCTAG 1437 0.517 MASPSELSLMDCKPHSYSLLLKSFGDQADHTYKLEDFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASRQQLQAYIANEGTTRPVLEEFIPIKQSTSEISEKAPNIADNKANWMTSAQLWSSQANEGTKPQSTIITSPTKEAEIGFSVSPKLALLDNKQRNGGGAFLPFSKERNSSSSCQSNNPTLRVIPELALASVEKEIMEDKKCTEPENNAVSCPKRENSGKASGSGNCTVVTDQGKGAPSVASDPQTTTTTTNQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQAAGSPAPQLVVLGGIWVPAEYAAAAAHTGAPTIYSPHPTSHAPPPPPHYCSATPVHQEFYAAAAAPQPAPPHYQTLLHHHLQMYKTNSSHQGPPESEMRGGGERSESIEDGKSESSSWKGESGENEGKRKGLAALREEGEESSRSETTLKF 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1296 478 MobiDBLite consensus disorder prediction 412 478 - -
Alju13g1296 478 MobiDBLite consensus disorder prediction 216 263 - -
Alju13g1296 478 MobiDBLite consensus disorder prediction 206 264 - -
Alju13g1296 478 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 21 446 IPR044787 GO:0003700|GO:0006355
Alju13g1296 478 MobiDBLite consensus disorder prediction 166 185 - -
Alju13g1296 478 MobiDBLite consensus disorder prediction 424 478 - -
Alju13g1296 478 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 260 320 IPR017930 -
Alju13g1296 478 Gene3D - 262 320 - -
Alju13g1296 478 FunFam Myb family transcription factor 262 320 - -
Alju13g1296 478 Pfam Myb-like DNA-binding domain 265 316 IPR001005 -
Alju13g1296 478 NCBIfam myb-like DNA-binding domain, SHAQKYF class 263 318 IPR006447 GO:0003677
Alju13g1296 478 SUPERFAMILY Homeodomain-like 260 321 IPR009057 -
Alju13g1296 478 Coils Coil 59 79 - -
Alju13g1296 478 MobiDBLite consensus disorder prediction 171 185 - -
Alju13g1296 478 Coils Coil 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1296 Alju-ChrAlju13 31659462 31661764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1296 1 478 G2-like Transcription Factor Family AT2G03500 51.107 1.39e-136 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Alju13g1296 Myb_DNA-binding 1e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g1627 06 22167965 22170651 Alju13g1296 13 31659462 31661764 CCT
Alju13g1296 13 31659462 31661764 Alju13g1296 13 31659462 31661764 ECH