Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1295 ATGACCATTGACGACGAGAGCTCCATATACGTTGGAGGTCTTCCCTGCGATGCCACCGAAGATACCATCCGCACCGTCTTTGATCTGTATGGCGCCATTCTTGATGTCAAGATTATTAATGATGTTCGGAATAGGGGAAAGTGTTACTGTTTTGTAACTTTCACAAATCCTCGATCAGCAGTTGATGCAATCAATGACATGAATGGAAGGACCATTGATGGGCACATGGTTATAGTAAACGGGGTGAGGACTCGAGGTGGAAGATCACATTTTGGTAGAGAACCTATTCGTCATGACACTGATAGGAATGGAGACTGGGATCATGGTAGAGATCGAGCCCGAGATTATAATCATGACAGGGACAGGCACAGTAATAGAAATAGTGATTGGTCTCGAGAGCGTGATAGATCACGGGAGCATGATAGATCTCGAAACTTTGAGCATGAAGGGGATAGACGATATGAGCATGAACATTATCATGATCAAGGAAGAGAACCTTTGCATGTTAAAGATCGAGGTGAAGAGAGATATCAGGCAGATGATGAACAAGAACACAGCAAAGTACTTGGTCAAGCTGCACAAAGAGACTATGACCTAGATTATGATACAGACAGGAAGATGGACAGGACTTATGATCCTGACAGAAGTTTTGATGGGGATAGAAGTGAACACTCAAGAAGAAACAATGGATTAAATGTTACAAAACAACGTAACATGGATTTTTCATCAGACTCGAATGGTAACCTCAATGACGAGATTGGAGATGAATTAGAGAGGTCAACTCAAAGGTTTGGTCAACTGAAAAAAGAGGTCTCTCAGTTGGAAGAGAAGTTACAAGAGAAACGACATCTGGTTGCAGATTTACAAAAGCAATCTAGGAAACTGGAGGATGCATTAATTAATGCAAAGAAGTATTCTTCATATCATCAGGTGCAGTTGGCCAAGGTACACGAATGTTTTCTGCAACTGAAAGATTACTCAGAGCGACTAAAAACCAGTGAAAAAGAACTTCAGAGTCTGGTTGATACGATAAGGTTAGAGAGTGATGGTGATGGAGAGGACGTGGCTTAG 1071 0.4183 MTIDDESSIYVGGLPCDATEDTIRTVFDLYGAILDVKIINDVRNRGKCYCFVTFTNPRSAVDAINDMNGRTIDGHMVIVNGVRTRGGRSHFGREPIRHDTDRNGDWDHGRDRARDYNHDRDRHSNRNSDWSRERDRSREHDRSRNFEHEGDRRYEHEHYHDQGREPLHVKDRGEERYQADDEQEHSKVLGQAAQRDYDLDYDTDRKMDRTYDPDRSFDGDRSEHSRRNNGLNVTKQRNMDFSSDSNGNLNDEIGDELERSTQRFGQLKKEVSQLEEKLQEKRHLVADLQKQSRKLEDALINAKKYSSYHQVQLAKVHECFLQLKDYSERLKTSEKELQSLVDTIRLESDGDGEDVA 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1295 356 MobiDBLite consensus disorder prediction 87 230 - -
Alju13g1295 356 Gene3D - 2 95 IPR012677 -
Alju13g1295 356 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Alju13g1295 356 CDD RRM_SF 9 80 - -
Alju13g1295 356 MobiDBLite consensus disorder prediction 85 253 - -
Alju13g1295 356 PANTHER GEO13361P1-RELATED 6 192 - -
Alju13g1295 356 Coils Coil 323 343 - -
Alju13g1295 356 SMART rrm1_1 8 80 IPR000504 GO:0003723
Alju13g1295 356 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 75 IPR000504 GO:0003723
Alju13g1295 356 Gene3D - 250 349 - -
Alju13g1295 356 Coils Coil 257 305 - -
Alju13g1295 356 SUPERFAMILY RNA-binding domain, RBD 4 107 IPR035979 GO:0003676
Alju13g1295 356 MobiDBLite consensus disorder prediction 231 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1295 Alju-ChrAlju13 31653336 31656820 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1295 7 73 Eukaryotic Initiation Factors Gene Family AT2G23350 32.836 4.68e-07 49.7