Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1265 ATGAGTTTTCCTGATCATCACTCTGGCTTCATGCTACCGCCGATAGCGTTTGCGGCGGATGACGATTCCAATGGAAGGTGGCCACAATACCCAATTAACAACGAACTATTCGATTCACATTCAGCATTTGATCAGTTTCCTCCGTTCAAGAGGCCCAGAACATCCGAAAGCAATCACTTCGATCTCTCGCCATTCCCGCCGGCGCCGGCGCCGGCGCCGCCCATGAATTCCAGGATGCACAATCCACAAAATCCTCCGACAAACAGAGGAGGAACGAGCCACATTTTTTATAAGACTCGCTTGTGTGCGAAATTCAGAATGGGTACCTGCAGGAACGGCGAGAATTGCAATTTTGCTCATGGCAATGAGGACATGAGGCAGCCACCTGCAAATTGGCAGGAGCTTGTAGGTTTACGTGAAGAAGAAAGGTCATCTGGAAATTGGGACGATGACCAGAAAATCATACATAAAATGAAGCTTTGCAAGAAGTATTACAATGGTGAGGAATGCCCTTATGGTGAAAGGTGCAATTTTCTTCATGAGGATCCGTCCAAGTTCAGGGATGATGCAGGGAGGTGCAGGGAGAGCTCAGCTATAAGCCTTGTGGCTAATGGATCTCCAAAGTCTCACTTGAATGGCCCTAATAATTCAGACAATAATAAGAATGTCAACAATGGGGGTGATGGTTTTAGAACAAATGGGAAGGCTCCTTTCTGGAAGACTAAGTTGTGTAGCAAGTGGGAGACAACAGGACATTGCCCTTTCGGTGATAAATGTCATTTTGCCCATGGACAAGCAGAGTTACAAGTGCCTGGTGGACGCATTGAAGCAGAAACTATAGTAGCTGCATCAATTCCTGTGAATGATGTATCTCCTATCAACGCTGTAAGTATACTTGATTCAAAGGAAGATGAGCAAAAAAAGAAGAATTTGCTGAAGTGGAAAATAAACAAGAAGGTCAATCGAATTTATGGTGATTGGCTTGATGACCTTCCATTGCCAAGATGGTCAATTGGATCCTAA 1023 0.4506 MSFPDHHSGFMLPPIAFAADDDSNGRWPQYPINNELFDSHSAFDQFPPFKRPRTSESNHFDLSPFPPAPAPAPPMNSRMHNPQNPPTNRGGTSHIFYKTRLCAKFRMGTCRNGENCNFAHGNEDMRQPPANWQELVGLREEERSSGNWDDDQKIIHKMKLCKKYYNGEECPYGERCNFLHEDPSKFRDDAGRCRESSAISLVANGSPKSHLNGPNNSDNNKNVNNGGDGFRTNGKAPFWKTKLCSKWETTGHCPFGDKCHFAHGQAELQVPGGRIEAETIVAASIPVNDVSPINAVSILDSKEDEQKKKNLLKWKINKKVNRIYGDWLDDLPLPRWSIGS 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1265 340 ProSiteProfiles Zinc finger C3H1-type profile. 238 266 IPR000571 GO:0046872
Alju13g1265 340 SUPERFAMILY CCCH zinc finger 155 182 IPR036855 GO:0046872
Alju13g1265 340 MobiDBLite consensus disorder prediction 204 229 - -
Alju13g1265 340 ProSiteProfiles Zinc finger C3H1-type profile. 155 183 IPR000571 GO:0046872
Alju13g1265 340 SUPERFAMILY CCCH zinc finger 237 269 IPR036855 GO:0046872
Alju13g1265 340 SMART c3hfinal6 96 122 IPR000571 GO:0046872
Alju13g1265 340 SMART c3hfinal6 238 265 IPR000571 GO:0046872
Alju13g1265 340 SMART c3hfinal6 155 182 IPR000571 GO:0046872
Alju13g1265 340 ProSiteProfiles Zinc finger C3H1-type profile. 96 123 IPR000571 GO:0046872
Alju13g1265 340 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 239 265 IPR000571 GO:0046872
Alju13g1265 340 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 97 121 IPR000571 GO:0046872
Alju13g1265 340 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 157 180 IPR000571 GO:0046872
Alju13g1265 340 MobiDBLite consensus disorder prediction 48 92 - -
Alju13g1265 340 FunFam Zinc finger CCCH domain-containing protein 91 127 - -
Alju13g1265 340 Gene3D - 91 127 - -
Alju13g1265 340 Gene3D - 152 188 - -
Alju13g1265 340 Gene3D - 232 270 - -
Alju13g1265 340 SUPERFAMILY CCCH zinc finger 94 127 IPR036855 GO:0046872
Alju13g1265 340 MobiDBLite consensus disorder prediction 64 80 - -
Alju13g1265 340 FunFam Zinc finger CCCH domain-containing protein 233 270 - -
Alju13g1265 340 MobiDBLite consensus disorder prediction 204 231 - -
Alju13g1265 340 PANTHER CCCH ZINC FINGER/TIS11-RELATED 55 187 IPR045877 GO:0003729
Alju13g1265 340 FunFam Zinc finger CCCH domain-containing protein 39 152 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1265 Alju-ChrAlju13 31396207 31398346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1265 238 269 C3H Transcription Factor Family AT1G68200 59.375 8.75e-08 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju13g1265 zf-CCCH 4.8e-11 CL0537