Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1250 ATGGTGCATTCAAAGAAGTTCCGAGGTGTCAGACAACGTCACTGGGGCTCATGGGTCTCCGAAATTCGCCACCCTCTCCTGAAGAGGAGGGTGTGGCTGGGGACATTTGAGACGGCGGAAGAAGCGGCGAGAGCATACGATCAAGCTGCCATTTTGATGAGTGGACGGAATGCGAAGACGAATTTCCCGATATCCCAGACACCGGAGGGCGATCCTAAGGTGGCGGCGACTGATCATAATAACAACAAGGCGGCCGGGGCGGCGAGGGATCTGGAGGAGATCTTACACGCGAAGCTGAGGAAATGTGGGAAGCTGCCGTCGCCGTCGATGACGTGCCTGAGGCTGGACACGGAGAACTCCAACATCGGAGTGTGGCAGAAACGAGCCGGCCAGCGTACGGATAACTCCAACTGGGTTATGACAGTCGAGCTGGGAAAGAAGACCAACAACAGCAACAACAGTGAGAATTATAACACTAACAGTAATAATGGGTCAGAGAAAACGACGTCGTCTTCGTGGACTACGTGCGATGAGTCTGCAATCTCATCAGAAGGCAATAATGAAGTGGCTATGGTGGGAGGAGGAGGAATGAACGAAGAAGAAAGGATTGCACTGCAAATGATCGAAGAACTTCTTAACAGAAACTGTCCAAGTCCTCCTCCATTACCAGGACCTTCATTTCATAATATGGTAGTTGAAGAAGACAACCAGCTTGTTCATCATGGGGAAAGCTTTCTGTTTTGA 744 0.5081 MVHSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPISQTPEGDPKVAATDHNNNKAAGAARDLEEILHAKLRKCGKLPSPSMTCLRLDTENSNIGVWQKRAGQRTDNSNWVMTVELGKKTNNSNNSENYNTNSNNGSEKTTSSSWTTCDESAISSEGNNEVAMVGGGGMNEEERIALQMIEELLNRNCPSPPPLPGPSFHNMVVEEDNQLVHHGESFLF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1250 247 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Alju13g1250 247 MobiDBLite consensus disorder prediction 145 172 - -
Alju13g1250 247 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Alju13g1250 247 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Alju13g1250 247 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 165 - -
Alju13g1250 247 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Alju13g1250 247 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Alju13g1250 247 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Alju13g1250 247 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Alju13g1250 247 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Alju13g1250 247 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1250 Alju-ChrAlju13 31260721 31261712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1250 1 215 AP2-EREBP Transcription Factor Family AT1G15360 55.046 3.21e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju13g1250 AP2 1.1e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju13g1250 13 31260721 31261712 Alju08g0798 08 6007434 6008121 ECH
Alju13g1250 13 31260721 31261712 Alju13g1250 13 31260721 31261712 ECH