Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1222 ATGGACCTTCAACTAGGCCTCTCTCTCCCCTCCTTTCATTCTGATGAAGATGATGATATCTTCACTTCATTCACTCTCTCTCACAAGAAACGCAGTTTCAGCGATCTCCTTCATCACCATCAAAAACACAGCGAAGAACAAGAAGACGACGACGACGACGTTTTGCTTCCCACCACTCTGCCTCTCCTTCCCTTAACACCTTCCCTTGATGCAGACCTTGACGACAACGACCTCCATACCAGCTCCTCCATTGTCACCAAACATGATGGGGATGATGGTGGAGAATCTGCAGCAGTAGGGTGGCCACCATTGATGTCTCAGAGGAAGAAGCTTCGCTTTGATCATGAAGAAGAAGATGCCGTGGCGGGGATTCCTCATAAACGTGCTTCTGCAGAATCTAATAATTCCTTATACGTTAAAGTAAGGATGGAGGGAGAAGGAATTGGACGAAAGATTGATCTTAGCTTGCATCACTCTTTTCAGAAGCTCAAGCAAACCTTGATCGCCATGTTTGGAAAATGCAATGACCATTCAGACAGCTATGAATTAGCTTATCAGGACAGAGAAGGTGACTGGTTGCTTGCAGAGGATCTGCCATGGAAAAACTTCCTCCAGTGTGCTCAACGTCTCAAATTGGTGAAGAGAACAGGCTGA 654 0.4618 MDLQLGLSLPSFHSDEDDDIFTSFTLSHKKRSFSDLLHHHQKHSEEQEDDDDDVLLPTTLPLLPLTPSLDADLDDNDLHTSSSIVTKHDGDDGGESAAVGWPPLMSQRKKLRFDHEEEDAVAGIPHKRASAESNNSLYVKVRMEGEGIGRKIDLSLHHSFQKLKQTLIAMFGKCNDHSDSYELAYQDREGDWLLAEDLPWKNFLQCAQRLKLVKRTG 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1222 217 ProSiteProfiles PB1 domain profile. 136 217 IPR000270 GO:0005515
Alju13g1222 217 SUPERFAMILY CAD & PB1 domains 129 212 - -
Alju13g1222 217 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 215 IPR003311 GO:0005634|GO:0006355
Alju13g1222 217 MobiDBLite consensus disorder prediction 82 101 - -
Alju13g1222 217 Gene3D - 137 217 - -
Alju13g1222 217 Pfam AUX/IAA family 27 173 IPR033389 -
Alju13g1222 217 Pfam AUX/IAA family 178 215 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1222 Alju-ChrAlju13 30934193 30935318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1222 103 210 B3 DNA Binding Superfamily AT2G46530 27.007 2.57e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Alju13g1222 AUX_IAA 2.1e-18 CL0072