Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1221 ATGACTGTTACTTTCTCATTCCTAGCCCCAAAAGAAGGATATTGGGCGTCCTCTACGGTTCTACACTTCAGAAATAAAATTAGTCACCTCATGGAAAGCAAAGGACTAGCACTGAAGCCACAGCCCAAGAAGAATCTATGGAAGCCTGAGGAAGATTTGGTTCTGAAAACATACATTGAAGCTCACGGTGAAGGAAACTGGGAAGCAGTTTCCAGAAATTCAGGCAAGTTCTTCTCTGAGAATCTGTCCCTATCTATGCTTATCATGTGTCTGAATAGAGGAGGGAAGAGTTGCAGGCTAAGATGGAAGAACTATTTGAGACCAGACATTAAACGCGGAAGAATGTCTGAAGAAGAAGAAGACCTTATCATCAGACTCCATAAGCTTCTTGGCAACCGATGGTCACTGATAGCTGGAAGAATTCCTGGTAGGACCGATAACGAAGTGAAGAATTACTGGAATACCCATTTGAACAAGAGATGCCCTCGAGGCAAAAGGAAAGCCATCGATTCAAACAACGATGACCAAGAAACCAGCAAGAAACCACGAAGCAGCAACTCCGACTTTCCGATTTCCGCAAGCATCGCAGAGACAGGGTTGTTAGATGCGAGGAAAGAAGAGAACATCACAAGCTCTTGGGTCGACGAATCGCAGAGCTTCCGTTGTGACCTAGATTTTCCGATTGTGCCTGGGAACAGTGAGGTATTTGGCTTCGACGATGAACCTTTCATGACGAATTTGGATTCCATTGTCCTGTTTGAAACTGAAGCTTTAGACTATGGTTGGTTGGAGTCCAACTCGCACAAACAATGCTTCATGCCATAG 825 0.4461 MTVTFSFLAPKEGYWASSTVLHFRNKISHLMESKGLALKPQPKKNLWKPEEDLVLKTYIEAHGEGNWEAVSRNSGKFFSENLSLSMLIMCLNRGGKSCRLRWKNYLRPDIKRGRMSEEEEDLIIRLHKLLGNRWSLIAGRIPGRTDNEVKNYWNTHLNKRCPRGKRKAIDSNNDDQETSKKPRSSNSDFPISASIAETGLLDARKEENITSSWVDESQSFRCDLDFPIVPGNSEVFGFDDEPFMTNLDSIVLFETEALDYGWLESNSHKQCFMP 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1221 274 SUPERFAMILY Homeodomain-like 43 153 IPR009057 -
Alju13g1221 274 Gene3D - 114 188 - -
Alju13g1221 274 MobiDBLite consensus disorder prediction 163 190 - -
Alju13g1221 274 CDD SANT 47 106 IPR001005 -
Alju13g1221 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 106 IPR017930 -
Alju13g1221 274 CDD SANT 114 157 IPR001005 -
Alju13g1221 274 ProSiteProfiles Myb-like domain profile. 107 157 IPR001005 -
Alju13g1221 274 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 41 196 - -
Alju13g1221 274 MobiDBLite consensus disorder prediction 164 182 - -
Alju13g1221 274 ProSiteProfiles Myb-like domain profile. 39 106 IPR001005 -
Alju13g1221 274 Pfam Myb-like DNA-binding domain 112 157 IPR001005 -
Alju13g1221 274 Pfam Myb-like DNA-binding domain 45 106 IPR001005 -
Alju13g1221 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 161 IPR017930 -
Alju13g1221 274 FunFam Transcription factor TT2 115 186 - -
Alju13g1221 274 Gene3D - 46 111 - -
Alju13g1221 274 SMART sant 43 108 IPR001005 -
Alju13g1221 274 SMART sant 111 159 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1221 Alju-ChrAlju13 30920342 30921998 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1221 31 236 MYB Transcription Factor Family AT5G52600 49.296 1.84e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju13g1221 Myb_DNA-binding 9.1e-09 CL0123