Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1180 ATGGGTAACAAAAAGAAACAAGTTGGAGATAACAGTTGCAAAGCTTCTGATAAGGACACTGAGGTATTTATTTCCATGTCTCAAGAGTTAAAGAGTGAAGGGAACAAGCTGTTCCAAAAGAGGGATCATGAAGGAGCCATCTTAAAATATGAGAAAGCCATTAAATTGCTACCAAGAAACCATATAGATGTGTCTTGTCTTCGGAGTAACATGGCGGCTTGCTACATGCAGATGGGATTAAGCGAGTATCCGAGGGCCATTCATGAATGCAATTTAGCTCTTGAAGTTACTCCAAAGTACAGTAAAGCCCTTTTGAAGAGGGCAAGGTGCTATGAGGCTTTAAATAAGTTGGATTTAGCTCTGAGAGATGTTAGTAATGTACTGAAGATGGAACCAAACAATGTTATGGCGTTGGAAATTTCGGAGGTGGTGAAAAATTCACTTGAAGAGAAGGGATTAAAAGTAGCAGACATAGCAATTGAGTTGCCTTCTGATCATGCTGAACCTCCTTGTGTGCTTCCAGAAGTAGTAAAAGAGAAGAAACACAAGAAGAGCAAAAAGGTTGAAAAGCTTTCTGAGGAGAAATTGGAAGACAAGAAGTTGAAGGACAGTGTTGAGAAGAAGAAGACTATGAACAAATCTAAAGAGAAGTTAGAAGACAAGGAGGAGGAGGACAATGTTGAGCCGAAGAAGGCTGTGAACAAATCCAAAAAGAAGGTGGCCAAGGAAAAGATTGACGAGAAGAAGGCTGATATAAAGGAGGTTGTTGAGGAAAGGCTTGATGGTAGAAAAGAAGATGCAGCTAAGAAAACAGTGAAACTTGTTTTTGGTGAGGACATTAGATTGGCAGAATTAGAGGTCAATTGCAACCTCCAACATCTAAGGAATGTTATCAGCGACCAATTTCCTAGCCTGGGAGCGGTTCTTGTCAAATACAAGGATCAAGAAGGTGATTTAGTCACAATCACTTCTGATGAAGAATTGAGATGGGCTGAAACATCAATAGGATCAGAGGGTTGGACCCGCCTATACCTAATGAATGCTGATCCTAAGGAGGATCCATTGTTTGAGAAAATTAATGAAAAGAAGAAACAAAATTGTGACAATAATGATACAGTTGAGAATGGTTGTGTGGTAAAAGAAAAGGAACTGATTAGATCATCTTGTATTGAGGATTGGATAATCCAGTTTGCCCAACTTTTCAAGAACCATGTTGGAATTGGATCTGACAGATACTTATATTTTCATGAACTTGGAATGAAACTCTATTCTGAGGCTATGGAGGAGACAGTTACCGGTGACGAAGCGCAAAGCCTGTTTGACATGGCAGGAGCTAAGTTTCAAGAAATGGCGGCTTTAGCATTGTTCAACTGGGGAAATGTTCACATGTCCAGGGCAAGGAAGAAAGTGAATTTCACAGAAGAATCTTCTACAGAGAATCTTCATGAACAGATAAAAAACTCATATGAATGGGTGCAGCAAGAATATAAAACAGCAGGGGAAAAATATGAAGCTGCCATTAAAATCAAACCAGATTTTTATGAAGGCTTTTTGGCACTAGGCCAACAGCAGTTTGAGCAAGCAAAACTGTCTTGGTATTATGCAATTAACACACATGTTGACTTAGCAACATGGCCTTCTGCTGAGATTCTTCAACTTTACAACAATGCCGAGGAAAACATAGAGAAAGGAATGCATATATGGGAACAATTAGAAAAGCAATGCACGAACGAAGATTCTAGATCAAAAGATATCAAATTCCATTTACAGAATATGGGATTGGATTGCCTATTGCAGAATATATCACCCGAAGAAGCAGCAGCACAGGCAGCAACTTTGAGGTCTCAAATAAATATCCTTTGGGGTACCATGCTATATGAACGTTCAATTATGGAATTCAAACTAGGGCTACCAGTATGGCATGAATGTCTGGAAGTTGCAATTGAGAAGTTTGAACTTGCTGGAGCTTCTCCAACAGATATAGCTGTAATGTTGAAGAACCACTGTTCAAATAATACTGGTGCTGAAGGTCTAGGATTCAACATTGATGAAATAGTACAAGCATGGAATGAGATGCATGAAGCCAGAAGGTGGCAGAGTCGAGTTTCGTCATTTCATTTGGAAACCTTATTCAGAAGGCGAACTTCAAAAATCTATCATGCCTTAGAGCTTGCATGA 2178 0.3944 MGNKKKQVGDNSCKASDKDTEVFISMSQELKSEGNKLFQKRDHEGAILKYEKAIKLLPRNHIDVSCLRSNMAACYMQMGLSEYPRAIHECNLALEVTPKYSKALLKRARCYEALNKLDLALRDVSNVLKMEPNNVMALEISEVVKNSLEEKGLKVADIAIELPSDHAEPPCVLPEVVKEKKHKKSKKVEKLSEEKLEDKKLKDSVEKKKTMNKSKEKLEDKEEEDNVEPKKAVNKSKKKVAKEKIDEKKADIKEVVEERLDGRKEDAAKKTVKLVFGEDIRLAELEVNCNLQHLRNVISDQFPSLGAVLVKYKDQEGDLVTITSDEELRWAETSIGSEGWTRLYLMNADPKEDPLFEKINEKKKQNCDNNDTVENGCVVKEKELIRSSCIEDWIIQFAQLFKNHVGIGSDRYLYFHELGMKLYSEAMEETVTGDEAQSLFDMAGAKFQEMAALALFNWGNVHMSRARKKVNFTEESSTENLHEQIKNSYEWVQQEYKTAGEKYEAAIKIKPDFYEGFLALGQQQFEQAKLSWYYAINTHVDLATWPSAEILQLYNNAEENIEKGMHIWEQLEKQCTNEDSRSKDIKFHLQNMGLDCLLQNISPEEAAAQAATLRSQINILWGTMLYERSIMEFKLGLPVWHECLEVAIEKFELAGASPTDIAVMLKNHCSNNTGAEGLGFNIDEIVQAWNEMHEARRWQSRVSSFHLETLFRRRTSKIYHALELA 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1180 725 SUPERFAMILY TPR-like 28 528 IPR011990 GO:0005515
Alju13g1180 725 CDD PB1 271 328 - -
Alju13g1180 725 ProSiteProfiles PB1 domain profile. 269 348 IPR000270 GO:0005515
Alju13g1180 725 Coils Coil 188 224 - -
Alju13g1180 725 Coils Coil 238 258 - -
Alju13g1180 725 ProSiteProfiles TPR repeat profile. 101 134 IPR019734 GO:0005515
Alju13g1180 725 MobiDBLite consensus disorder prediction 204 232 - -
Alju13g1180 725 SUPERFAMILY CAD & PB1 domains 270 342 - -
Alju13g1180 725 Gene3D - 259 347 - -
Alju13g1180 725 ProSiteProfiles TPR repeat profile. 27 60 IPR019734 GO:0005515
Alju13g1180 725 Pfam PB1 domain 271 341 IPR000270 GO:0005515
Alju13g1180 725 Gene3D Tetratricopeptide repeat domain 25 156 IPR011990 GO:0005515
Alju13g1180 725 SMART tpr_5 65 100 IPR019734 GO:0005515
Alju13g1180 725 SMART tpr_5 101 134 IPR019734 GO:0005515
Alju13g1180 725 SMART tpr_5 27 60 IPR019734 GO:0005515
Alju13g1180 725 SMART PB1_new 269 348 IPR000270 GO:0005515
Alju13g1180 725 PANTHER PROTEIN CLMP1 5 723 IPR044517 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1180 Alju-ChrAlju13 30526628 30528891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1180 17 134 Calmodulin-binding Proteins AT3G25230 33.846 1.44e-09 59.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju13g1180 13 30526628 30528891 Alju13g1180 13 30526628 30528891 ECH