Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1163 ATGTGTTTACAGGACGCCGAGCAAGTTGGCGCCGATATGGAGAACCCAGATGATAGAAGAATGTCTTGGCCTTTGCATTGTGACCTCTTGCATACCCACATGGAAAAGGAACCTCCTTTTAGAACTTCCGACGATCGGAGTTTCTGTTTTGGGAATTCTTTTCCGCTGGAAAGCATAAATGAGGACGCAGTGATTGCAGACAAAAAACAGAACCAGATGAACTTTGCCCCTACTCTGCGATCTGGAGAGTGGTCCGATATCGGAGGTCGCTCCTATATGGAAGATGCTCACATCTGTATTGGAGACTTAGGAAAGAAGTTTGGTTATGATGTACTCAGTAAGGAAGTTATTTCCTTTTATGGGGTATTTGATGGACACGGAGGGAAGAGCGCCGCGGTATTTGTCCGTGATCATCTTCCAAGAGTTATCATTGAGGATGCTAATTTTCCTGTGGAGCTGGAGAAGGTAGTCACAAGGTCATTTTTACAGACAGATGCTGCATTTGCAGAGACATGTTCCCTTGAGTCTTCATTGTCTTCTGGTACAACTGCATTAACTGCAATCATTTTTGGGAGGTCTTTGCTAGTGGCCAATGCTGGAGATTGCAGGGCTGTTTTGTCCAGACGTGGAAGGGCGATAGAAATGTCCAAAGATCATAAGCCCTTGTGCATGAAAGAGAGGAAGCGAATCGAGTCTCTAGGTGGATACATCGATGACGGTTATCTGAATGGCCAGTTAGGCGTGACACGGGCGCTAGGCGACTGGCATCTAGAGGGCTTGAAGGAAATGAGTGAAAGAGGAGGACCTTTAAGTGCTGAGCCAGAACTCAAACTTACCACACTGACCAAAGAGGATGAGTTTCTGATAATTGGAAGTGACGGAATCTGGGATGTTTTCAGCAGCCAAAATGCTGTTGATTTCGCAAGAAGGCGGCTTCAGGAACATAATGATGTGAAATTATGCTGTAAGGAGATGGTGGAGGAAGCCATAAAGAGGGATTCGACAGATAATTTAACTGTTGTGATGGTGTGTTTTCACTCAGAATCACCACCACCTGTGGTGGTAGAGAGGCCAAGATTCAGAAGAAGCATATCTGCTGAGGGACTTCAGAATCTCAAGTCCTTCCTGGAAGATAGCTGA 1140 0.457 MCLQDAEQVGADMENPDDRRMSWPLHCDLLHTHMEKEPPFRTSDDRSFCFGNSFPLESINEDAVIADKKQNQMNFAPTLRSGEWSDIGGRSYMEDAHICIGDLGKKFGYDVLSKEVISFYGVFDGHGGKSAAVFVRDHLPRVIIEDANFPVELEKVVTRSFLQTDAAFAETCSLESSLSSGTTALTAIIFGRSLLVANAGDCRAVLSRRGRAIEMSKDHKPLCMKERKRIESLGGYIDDGYLNGQLGVTRALGDWHLEGLKEMSERGGPLSAEPELKLTTLTKEDEFLIIGSDGIWDVFSSQNAVDFARRRLQEHNDVKLCCKEMVEEAIKRDSTDNLTVVMVCFHSESPPPVVVERPRFRRSISAEGLQNLKSFLEDS 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1163 379 CDD PP2Cc 80 345 IPR001932 -
Alju13g1163 379 ProSitePatterns PPM-type phosphatase domain signature. 119 127 IPR000222 GO:0043169
Alju13g1163 379 Pfam Protein phosphatase 2C 89 337 IPR001932 -
Alju13g1163 379 SUPERFAMILY PP2C-like 73 346 IPR036457 -
Alju13g1163 379 ProSiteProfiles PPM-type phosphatase domain profile. 80 345 IPR001932 -
Alju13g1163 379 FunFam Probable protein phosphatase 2C 22 64 348 - -
Alju13g1163 379 Gene3D - 61 349 IPR036457 -
Alju13g1163 379 PANTHER PROTEIN PHOSPHATASE 2C 67 343 IPR015655 GO:0004722|GO:0006470
Alju13g1163 379 SMART PP2C_4 70 343 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1163 Alju-ChrAlju13 30373218 30375858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1163 69 377 PP2C-type Phosphatase Gene Family AT2G25620 62.058 5.98e-140 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Alju13g1163 PP2C 3.3e-67 CL0238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju13g1163 13 30373218 30375858 Alju13g1163 13 30373218 30375858 ECH