Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1160 ATGGGTTCGTCCAACAGTAGGCTTCGGTCTCGCTCTTCCACCCACCGAGTCAATGGCACTGACCGCTTCAGATTCTCCTCCCTTCTCTGCGGTGGCTTCGCCTCTCGTTCCACCTATGAGATGGACGATCAATCAACTGAACTTCAGAGAGATTCTGCAACAGAATTTAATGATGAAAATCATAAAATTGTTGATGTGTCGTCTATACCATGTACAGAAGCTATAATTGGTAGCAGCCTCCGTACTGAAACTGCAAGCTCATCGAATAATAGAACTGAGTTTAGTGAGATTTCTACTGTTGAATGTTCCTCTAGAAGTGTTTCAACTAGTTGTCAAATGAAAAACTTGTCTGTAAGTAAGGAGCTACTTCCTCCTCATCAGGTAAGTGCTGCTCATAGTTATGATGAATCTTATAGGGATAGTAGCAACACAGCTAGTACTTCATTTGTAGAACAGCAGTCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAAGATGCAGTCAATGACGTTGATGGTTCAGTGGAAAGTGGCGTTTCTCAAATATCTCGTGAGACAATGTATCCGAGGAGCTCAACCTCACATGAGCAAGGAGATTCCAATGCTGATAGTGTTTCTATTGAGAATCACACTCATTCAGCTGTACCTATCCATAATTCTGAATTGGATCATGTTGCTCAGGTTTCCAATTTACCTGTAACTTCTGAGTCGCCTGAAAATGAAACCTTTCAAGAGACGATACCTTCAGGTTTAGGTTTTCTTGTGTCCAATAGGGAAAGAGGGCAGGGAAATGACAGTATATTTCAAGTTGATGTTGTCGCAATATCTTCCAACGTTTTGTCTGGTGGCAATACTGATGTCAGTGATCGTGATGCTAGAAGGGATAGTAGAAGGCTATTTTGGGATGCTTTTTCAAGACGTAGTTCCAGAAGATTTGGTGATTCTCGAACCTTTGTCTTCTCAGCTGGTGACATGGATGATCCAAGTTCTCAAGATCAATGGCTTCTTGATTTGAGTAGTAGTTCCCCAAATGATAGGGTTGGAGATGACTCTGGATATTTAGGCAGTAGGATTCATAGATTAAACGAGCGAATGAGGCACTCAAGATCTGAGATCTGGGAAAGACTTCGTGGTGGCCTTGATGAGATTGGTCGGTTGAATCCTTCTTGTCCATTAGGACTCCACCCTGATGGCATGTGTTCATGCGAATCTTTCCAGATGGCTGAGGAGTCCAGTACTCGTGCAAGTATATCAAGAATAGCTATGCTTGCTGAAGCTCTATTTGAGGTTTTGGATGAAATCCATCGCCAACCTGTATCACTTGCCCTCTCCATGGTCTCTCTTCCAGCACCGGAATCAATTGTAGACTCTTTACCTCTTAAGTGCCACAAAAAGATTGACACAGCTGTTAATGGAAGTGATGCTGAACAATGTTACATATGCCTGGCCGAGTATGAAGAAGGAGACAAAATACGAGTTCTTCCATGCAACCATGAGTACCACATGTCATGTGTTGATAAGTGGCTTAAAGAAATACATGGTGTCTGCCCTCTTTGTCGTGGGAATGTTTGTGGAGGGTCCAACGAGTCTTCTGCCTCTAACGCCGCAGAAGTACCATCTCAATGA 1629 0.4297 MGSSNSRLRSRSSTHRVNGTDRFRFSSLLCGGFASRSTYEMDDQSTELQRDSATEFNDENHKIVDVSSIPCTEAIIGSSLRTETASSSNNRTEFSEISTVECSSRSVSTSCQMKNLSVSKELLPPHQVSAAHSYDESYRDSSNTASTSFVEQQSSDPVSVNVSANKDAVNDVDGSVESGVSQISRETMYPRSSTSHEQGDSNADSVSIENHTHSAVPIHNSELDHVAQVSNLPVTSESPENETFQETIPSGLGFLVSNRERGQGNDSIFQVDVVAISSNVLSGGNTDVSDRDARRDSRRLFWDAFSRRSSRRFGDSRTFVFSAGDMDDPSSQDQWLLDLSSSSPNDRVGDDSGYLGSRIHRLNERMRHSRSEIWERLRGGLDEIGRLNPSCPLGLHPDGMCSCESFQMAEESSTRASISRIAMLAEALFEVLDEIHRQPVSLALSMVSLPAPESIVDSLPLKCHKKIDTAVNGSDAEQCYICLAEYEEGDKIRVLPCNHEYHMSCVDKWLKEIHGVCPLCRGNVCGGSNESSASNAAEVPSQ 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1160 542 SMART ring_2 479 520 IPR001841 -
Alju13g1160 542 ProSiteProfiles Zinc finger RING-type profile. 479 521 IPR001841 -
Alju13g1160 542 FunFam Putative RING zinc finger domain superfamily protein 446 526 - -
Alju13g1160 542 Pfam Ring finger domain 478 521 IPR001841 -
Alju13g1160 542 SUPERFAMILY RING/U-box 473 524 - -
Alju13g1160 542 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 537 - -
Alju13g1160 542 MobiDBLite consensus disorder prediction 175 205 - -
Alju13g1160 542 MobiDBLite consensus disorder prediction 134 168 - -
Alju13g1160 542 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 444 525 IPR013083 -
Alju13g1160 542 MobiDBLite consensus disorder prediction 128 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1160 Alju-ChrAlju13 30340243 30343658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1160 390 525 C3H Transcription Factor Family AT5G45290 52.980 1.53e-41 155