Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1158 ATGGCCGGAAATCTCCCCGGAGTAGAGTGTGCTCGAAGGAGAAGGTTTCATCAGAGTCGAGTATGGTCTGATTCACCTTCCTCCATGGCTCCTCATACCTGCACTAGACGCTCTTCTTTCTGCTTGTACACTAGCAACCATGAATCTCTTTCTTCTTCCTCTTTACCGCAAAGAAGCTTGGTATATCAGGCATACCCACATGAAGTGCTGGGAGGTGCAGCTAGAGAAGCCAAACAGAGATTGGATGAGAGATTAGGAACACAGAGGAAAGCAGAGATTAAAAGTAAGCAGAAGAATAGAGAGAAGGTGAGGAGTGAAGCAGAGTTGCAGATAGAAATATATGGGGCAAAGAAAAATGGAAGTAGGAGATTCAGTTGGAGTAAATTGAGCTGGAAGGCAACAGAACAAGAGGAATGTGCCGTGTGCTTAGAATCATTCAAAAATGGCGACACACTTATAAATCTTCCATGTGCACACAAGTTCCATTCAAGGTGTTTGGAGCCATGGCTGCAAAATAATTCTCACTGTCCTTGTTGCAGAACCACCATCATCAATATTTCTCACTAG 567 0.4409 MAGNLPGVECARRRRFHQSRVWSDSPSSMAPHTCTRRSSFCLYTSNHESLSSSSLPQRSLVYQAYPHEVLGGAAREAKQRLDERLGTQRKAEIKSKQKNREKVRSEAELQIEIYGAKKNGSRRFSWSKLSWKATEQEECAVCLESFKNGDTLINLPCAHKFHSRCLEPWLQNNSHCPCCRTTIINISH 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1158 188 ProSiteProfiles Zinc finger RING-type profile. 139 180 IPR001841 -
Alju13g1158 188 FunFam Zinc finger family protein 113 185 - -
Alju13g1158 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 186 IPR013083 -
Alju13g1158 188 PANTHER SI:CH211-59O9.10 135 183 - -
Alju13g1158 188 CDD RING-H2_PA-TM-RING 138 180 - -
Alju13g1158 188 Pfam Ring finger domain 138 180 IPR001841 -
Alju13g1158 188 SUPERFAMILY RING/U-box 126 185 - -
Alju13g1158 188 SMART ring_2 139 179 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1158 Alju-ChrAlju13 30330608 30331366 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1158 1 85 C3H Transcription Factor Family AT2G15580 52.128 4.50e-19 76.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju13g1158 13 30330608 30331366 Alju13g1158 13 30330608 30331366 ECH