Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1152 ATGGCTTTTCACGACCATCTGCCTCAAGAACTGGCTTTTCAGCCTTTCACGGATGAGCAGCAACAGTTAAGTCAAAACAGGGACATGCAGAGGATGATGCCGTTCTCCGCCGCCGCCGCCGGGGGAGGCCCGGGTCCGACGTGGCTGGTGAATAGCGGTGGGGGGCCGTCTTTGCGGCAGCAGAATTTCCTCCACTTGCCGTCGGAGTCGTCGGCGGATGATGTTCGGGGGAGTATGATGCCGTCATCGGAGAGGAGCAACGATCGAGACGGCGGTGGCGATCGGAGTCGCGGGGGCGGAGGCGGGAATTATGAATCAGAGGATTTGGCAGAGTACAAATCTGACATTTTGGGACATCCCCTTTACGACCAGCTCTTGTCGGCTCATGTGTCGTGTTTAAGGATTGCCACTCCGGTGGACCAGCTTCCTAGGATCGATGCCCAGCTTCAACAGTCACAACGCGTCCTTGAAAAATACTCTGGTCTTGGTAATGGCGTTGTTGATGAGAAGGAGCTTGACCAGTTCATGACGCATTATGTTCTATTGCTCTGTGCTTTTAAAGAACAACTTCAACAACATGTCCGGGTTCATGCCATGGAAGCTGTCATGGCTTGCTGGGAGCTTGAGCAGTCTCTTCAGAGCTTGACTGGAGTGTCACCAGGAGAAGGGACAGGAGCAACAATGTCGGACGATGAAGATGAGCAGGTAGAGAGCAATGCTAACATGTACGATGGTGGCCTTGATGCTGCTGACACCCTTGGATTTGGTCCTCTTGTTCCCACTGAAACTGAAAGATCTTTGATGGAGCGTGTCAGACAAGAACTCAAGCATGAATTAAAGCAGGGTTACAAGGAGAAGATTGTGGACATACGGGAGGAGATTCTGAGAAAGAGACGTGCCGGGAAGCTGCCTGGTGACACAACCTCCCTCTTGAAAGCTTGGTGGCAATCTCATGCTAAATGGCCTTATCCTACTGAGGAAGACAAGGCAAGGCTGGTGCAGGAAACAGGGTTACAACTAAAGCAAATAAATAACTGGTTTATTAATCAAAGGAAAAGAAATTGGCATACAAATCCTTCATCATCTACCTCCTCTAAAAGCAAGCGCAAGAGTAGCAATGCAGGAGAAACCAGTAACCAGAGCTTCATGTGA 1152 0.5061 MAFHDHLPQELAFQPFTDEQQQLSQNRDMQRMMPFSAAAAGGGPGPTWLVNSGGGPSLRQQNFLHLPSESSADDVRGSMMPSSERSNDRDGGGDRSRGGGGGNYESEDLAEYKSDILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVLEKYSGLGNGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEDEQVESNANMYDGGLDAADTLGFGPLVPTETERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTSSKSKRKSSNAGETSNQSFM 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1152 383 Pfam KNOX1 domain 112 153 IPR005540 GO:0003677|GO:0005634
Alju13g1152 383 ProSiteProfiles ELK domain profile. 274 294 IPR005539 GO:0003677
Alju13g1152 383 MobiDBLite consensus disorder prediction 14 31 - -
Alju13g1152 383 MobiDBLite consensus disorder prediction 1 106 - -
Alju13g1152 383 SMART ELK_2 274 295 IPR005539 GO:0003677
Alju13g1152 383 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 85 372 - -
Alju13g1152 383 FunFam homeobox protein knotted-1-like 3 isoform X1 295 356 - -
Alju13g1152 383 Pfam ELK domain 274 295 IPR005539 GO:0003677
Alju13g1152 383 Pfam Homeobox KN domain 314 353 IPR008422 GO:0003677|GO:0006355
Alju13g1152 383 Gene3D - 300 378 - -
Alju13g1152 383 ProSiteProfiles 'Homeobox' domain profile. 294 357 IPR001356 GO:0003677
Alju13g1152 383 MobiDBLite consensus disorder prediction 53 68 - -
Alju13g1152 383 SMART HOX_1 296 361 IPR001356 GO:0003677
Alju13g1152 383 MobiDBLite consensus disorder prediction 351 383 - -
Alju13g1152 383 SUPERFAMILY Homeodomain-like 296 361 IPR009057 -
Alju13g1152 383 SMART KNOX1_2 110 154 IPR005540 GO:0003677|GO:0005634
Alju13g1152 383 CDD homeodomain 297 358 IPR001356 GO:0003677
Alju13g1152 383 Pfam KNOX2 domain 167 216 IPR005541 GO:0003677|GO:0005634
Alju13g1152 383 SMART KNOX2_2 161 217 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1152 Alju-ChrAlju13 30284467 30288316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1152 1 370 Homeobox Transcription Factor Family AT5G25220 62.295 3.38e-171 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Alju13g1152 KNOX2 2.8e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju13g1152 13 30284467 30288316 Alju13g1152 13 30284467 30288316 ECH