Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1131 ATGACTATGGAGGACCAAAGGTGTGATTTGGTTGATGAAAATGGGACCACAAAAAAGTTTCCTGTTGGTATGAGTGTTCTGGCTGTTGACGATGACCCAATTTGTCTCAAAGTGTTGGAGACTTTGCTTGTCAAATGCGAGTACCAGGTTACAACAACTAATCAGGCCGTTAAGGCTTTGAAAATGCTAAGGGAAAACAGGAACAAGTTTGACCTCGTCATTAGTGATGTAAATATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTAGTAGGACTTGAAATGGACCTACCAGTCATCATGTTGTCAGCACACAGTGATACAAGGCTTGTGATGAAGGGTGTTACCCATGGTGCATGTGACTATTTACTGAAACCTGTTAGAATGGAAGAGCTTAAGAACATATGGCAACATGTGGTTCGAAGAAAGAAGTTTGATAACAAGGATCAGAATAAGGCTTCTCAGTTGGAGAAGGCGAACAATATGGCTGGGGAGGGGGAACAAGGCATCAGTTCCGAAAATAATTTGGATCAGAGTAAAATGCTGGGTAAAAGGAGGAAGGACCAAGGCGAGGATGAGGAAGAAGACGGTGAGGACAATGTTCACGAGAATGAGGAGGACCCATCAACACAGAAGAGGCCGCGTGTAGTTTGGTCAGTTGAGCTGCACAGAAAATTTGTTGCTGCAGTGGATCAACTGGGACTTGAAAAGGCGGTTCCCAAGAAAATTCTTGACATGATGAATGTTGAAGGGCTAACAAGGGAAAATGTGGCAAGCCATCTACAGAAATATAGGATCTATCTTAGAAAGGCAACTCAACAAGCTAAAATTGCTGCTGCATTGGGTGGTGAATCATCATACTTGCGGATGGGTTCATTAGAGGGATATGGAGAGTTTCGCACGTTATCTGGTTCAGGACGGCTCTCATCAACATTTGCATCTACTGGAATTTTTAGCAGACTGAACTCTCCAGCTGGCTTGAACATGAGAGGAATCAGTTCTTCTGGGCTGATCCAGCCCGGTCAGTCTCAAAACTCAAGCATAGCCACAAACGTTGGAAATCTTCAGACATCATCTATCTTGTCTGCAAACTCAAGTTTATTTCAAAACATTCCAACGCCAATAGAGCTTAGTCAATCTCAGCCAAGCAACTGTGCCGCTGGTATTAGGCAGTTTGGTTCAATTAATGATTCAGGTGGTTTTGCAGTTGCTAGTGGATTCCTGGACAGTAAAGCCACTGTTAGTGGTGCAAACAATTCTTGTGTCACAAGTAATCCTTTGATGTTAACAGGAAGCTCACAGCAATGTCAAAACCTGGGAGGATTTCGAAATCAATCTTCTTTTGGAGCTGCTCCCTTGAACACGGGAACTTTAGATATTTGTGGTTCCAATTTCTTGGACTATACACGATGCAACGAAGGCTGGCAGGGCGCAGTCCAGTTGTCTAAATTTCCCTCTAATTCTTTGCCATTACATGAGACTTTCACTGATGATCAGCTACCTTCTAATGTCAATGTTTCTTCCTCCAATACTCACATCAGTGACAACCCAGTTGATTTTTCTTCTGCTGTTCCACTGGAGGATCTTAGAGGTGAACTACAATGTCAAGAAGGCCTAATTGGGAATGTGGTTCAGTCTTCACGTTACACGATGAGGCAGAGCTGGGAACTACATAAGCAGGATTACAACCAAAACATGAACTGCAATTTCAATGCTGTGAATTCACTGGTTTCTTCTAATGGAATCATAAGTACCATGGATCAGAGTTTAAATCCAAATAATTCAACATGCAGTAAGAGGGTTGACGCATCTTTCATGGACCAATTCAATGGGGCTACTCCGTCAACCTCTCAATTTAATGAGGATGAGAGGTTCCCTTCAGATGTGAGATTCAAATCTACTGATGCATTCCAGGATGGTTTCATTAGAAATATTGGATATTTGGATGACATAATGGGTTCAATGGTTAAACGGGAGCAACATGAGATGATGATGATGGATGGAGAGACCCGATTCGATGCTTACCCCATTGGATCTTGTAGCTGA 2046 0.4277 MTMEDQRCDLVDENGTTKKFPVGMSVLAVDDDPICLKVLETLLVKCEYQVTTTNQAVKALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTRLVMKGVTHGACDYLLKPVRMEELKNIWQHVVRRKKFDNKDQNKASQLEKANNMAGEGEQGISSENNLDQSKMLGKRRKDQGEDEEEDGEDNVHENEEDPSTQKRPRVVWSVELHRKFVAAVDQLGLEKAVPKKILDMMNVEGLTRENVASHLQKYRIYLRKATQQAKIAAALGGESSYLRMGSLEGYGEFRTLSGSGRLSSTFASTGIFSRLNSPAGLNMRGISSSGLIQPGQSQNSSIATNVGNLQTSSILSANSSLFQNIPTPIELSQSQPSNCAAGIRQFGSINDSGGFAVASGFLDSKATVSGANNSCVTSNPLMLTGSSQQCQNLGGFRNQSSFGAAPLNTGTLDICGSNFLDYTRCNEGWQGAVQLSKFPSNSLPLHETFTDDQLPSNVNVSSSNTHISDNPVDFSSAVPLEDLRGELQCQEGLIGNVVQSSRYTMRQSWELHKQDYNQNMNCNFNAVNSLVSSNGIISTMDQSLNPNNSTCSKRVDASFMDQFNGATPSTSQFNEDERFPSDVRFKSTDAFQDGFIRNIGYLDDIMGSMVKREQHEMMMMDGETRFDAYPIGSCS 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1131 681 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Alju13g1131 681 FunFam Two-component response regulator 209 272 - -
Alju13g1131 681 SMART REC_2 24 136 IPR001789 GO:0000160
Alju13g1131 681 PIRSF RR_ARR_type-B 1 673 IPR017053 GO:0003677|GO:0003700|GO:0009736
Alju13g1131 681 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 372 IPR045279 GO:0009736
Alju13g1131 681 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Alju13g1131 681 Gene3D - 209 271 - -
Alju13g1131 681 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 210 269 IPR017930 -
Alju13g1131 681 Gene3D - 24 161 - -
Alju13g1131 681 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Alju13g1131 681 CDD REC_typeB_ARR-like 26 140 - -
Alju13g1131 681 MobiDBLite consensus disorder prediction 160 213 - -
Alju13g1131 681 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Alju13g1131 681 NCBIfam myb-like DNA-binding domain, SHAQKYF class 214 266 IPR006447 GO:0003677
Alju13g1131 681 SUPERFAMILY CheY-like 23 157 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1131 Alju-ChrAlju13 30099509 30102523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1131 19 384 Response Regulator Gene Family AT2G25180 53.403 3.90e-119 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Alju13g1131 Response_reg 2.7e-24 CL0304