Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1113 ATGTGCATCCGGCAGCAAAATATGGGAAGATTTTGTTATTTCCCTTTCTGGGGTGGAATGCATTTATTACATTCCGTAATTGAAGGATTCAAAGATGCAAGCTTCCTTTTCCAGAACCTGTTTTGCGTTGGGAGGCAGAAACTTGTCTCAATTTTTTCCTGCAGAATAATTGCTCAGTTTTGCAGCAGGATTGTGATGGAAGAGAACATGTCAAGCAAGGCATCAAGTGGTGTGGACAATATGAGCACAGAAGGTTTGGATTCAAATGACGATTCTTACGTCGCCTATCCAAACAAACACTTAGAACATTACAGCTGGGGTTCTCAGATATATGCTTACAGCCATCACATTTGGCTCGGGACCGTCAAGTCTGAGAAGGAACCAGAGATCGCTTATGACAGCGCGCCTCACCAGAATTTTCCTTGGACTAATATTGTTGTTAAGGAGCCAAACTTCCATAGCCAATATGCCCAAGAAACTGTTATACTTGAGATGATAAGAGGTGGTTCATGCGTACCAATGTTCCAAGGGCTTCATGGGGACAATTATGGAAACAATGAATCAGGTATTTGTGGTTTCAACCTTCCTGCAATGCAGAAAAGAGGTAACTTCTCACGCAAGCTACTTTTCAGAAAGATGCTGACACCGAGTGATGTGGGTAGGTTGAACAGAATTGTCATCCCCAAGAAGAACGCCACCATGTGTTTCCCTGAAATCTCTAGAAGAATGGAAGAAGATGCGAAAGCCGGGGTGCTAGCTGAGGTGCAAGTGGATTTCTTCGACCGGACCATGAGGGCTTGGAAGTTTCGGTATTGCTACTGGAAGAGCAGCCAGAGTTATGTGTTCACAAGGGGTTGGAGCAGGTTTGTGAAAGACAAGAACTTGAAGGTTAATGATGTTATAGCCTTTTACTTGTGTGAAGTACAAAGGGAAGGAAAAATAGTGAACAAGTTCTTGATGATTGACCCTGATGTGAGAGTAGGTGATGAAGAAGATTGTGGTGGAAGTAGCAGCAGAAGCTCAGTGATTGAAGTTGATGATGATCACATTACTGTTGAGTTGACTCAGCCTGAAATGTTGACCTCAGTGTTTGAAGGCTCTTCTTCTTTTTATCATCGTGATGATGTTGAGATCAAGAGGCGTGGAAAGCGAGTGATGGATTCTGAATCACCAACAAGTGTTGAGAGGAAAGGTTTTAGACTCTTTGGGGTTCAAATCAACTGA 1224 0.4306 MCIRQQNMGRFCYFPFWGGMHLLHSVIEGFKDASFLFQNLFCVGRQKLVSIFSCRIIAQFCSRIVMEENMSSKASSGVDNMSTEGLDSNDDSYVAYPNKHLEHYSWGSQIYAYSHHIWLGTVKSEKEPEIAYDSAPHQNFPWTNIVVKEPNFHSQYAQETVILEMIRGGSCVPMFQGLHGDNYGNNESGICGFNLPAMQKRGNFSRKLLFRKMLTPSDVGRLNRIVIPKKNATMCFPEISRRMEEDAKAGVLAEVQVDFFDRTMRAWKFRYCYWKSSQSYVFTRGWSRFVKDKNLKVNDVIAFYLCEVQREGKIVNKFLMIDPDVRVGDEEDCGGSSSRSSVIEVDDDHITVELTQPEMLTSVFEGSSSFYHRDDVEIKRRGKRVMDSESPTSVERKGFRLFGVQIN 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1113 407 Gene3D - 204 322 IPR015300 -
Alju13g1113 407 SMART B3_2 210 314 IPR003340 GO:0003677
Alju13g1113 407 ProSiteProfiles B3 DNA-binding domain profile. 210 324 IPR003340 GO:0003677
Alju13g1113 407 CDD B3_DNA 209 305 IPR003340 GO:0003677
Alju13g1113 407 SUPERFAMILY DNA-binding pseudobarrel domain 206 307 IPR015300 -
Alju13g1113 407 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 103 406 IPR044800 GO:0003700
Alju13g1113 407 Pfam B3 DNA binding domain 210 313 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1113 Alju-ChrAlju13 29929698 29935434 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1113 106 406 RAV Transcription Factor Family AT1G50680 41.590 2.71e-63 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju13g1113 B3 1.8e-22 CL0405