Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1057 ATGGGGAAACACAACAGTAACTCAAACAAGAACAGTAACCCTAAGCCACCTAATAACAGTACCAGTGTGACAGCTACAACCTCAACCAAGAAACGAACCCGACGAAGTGTCCCCAGAGATTCACCTCTTCAGCGTAGCTCAAAATATAGAGGAGTCACTAGGCACCGATGGACAGGACGATATGAAGCTCACTTGTGGGACAAGACTTGTTGGAATGAATCGCAGAACAAGAAAGGACGACAAGGTGCTTATGATGATGAAGAGGCTGCAGCACATGCTTATGATCTAGCAGCTTTAAAATACTGGGGTCAAGATACCATTCTCAACTTTCCGTTATCAACCTATCTCAACGAGATGAAACAGATGGAGGGTCAGTCAAGGGAAGAATATATTGGATCATTAAGAAGGAAAAGCAGTGGTTTTTCTCGGGGAGTTTCTAAATACAGAGGCGTGGCAAGACATCATCATAATGGAAGATGGGAGGCTCGCATTGGCAGAGTCTTTGGCAACAAATATCTTTATCTTGGGACTTATGCTACCCAAGAAGAAGCTGCCACGGCGTATGATATGGCAGCTATTGAATATCGTGGGCTTAATGCTGTCACCAATTTTGACCTAAGTCGTTATATTAAGTGGCTTAAGCCCAAAAATAATAACGGCATCAACATGATTAACAGTACTAGTGACAGTATTAAGAGTACAGTGGTTAGTGACTCTGATAATGATAACCCTAATTGCTCCGATACTAAATTCACTGCCCCATCACCAAACCCTAATATTTATGAAGAACATGGGTTCAATAGCTTCATCACCACCCACCAGCAAGATTCTGCTTCGTTCAGTAGTGGGGATGAAACCACCACCACGGCCACCGCCAGCTATGCTCAGTCACGGCAGGCGAATGCCACGTCAGCCCTAGGGCTCTTGCTTCAGTCGTCCAAGTTCAAGGAGATGATGGAGATGACGTCCGCTAACGATTTTTCGGTGGCGACGGTCACTGCGCCTGTGAAGCCGGAGGAGTCTCAGTTGCCGGCGTGCAGGTTTCCGGCGGATATTCAGACGTACTTTGAGTGTGAAGATGACTCTAACAATAATGGATATGGAGAAGAGGATTATAATACAGTGTTCAGTGAGCTCAATAATTATTCTTTTGTGTCTCCAATGTTCAACTATCATAATGACTTTGAGACATGA 1194 0.4464 MGKHNSNSNKNSNPKPPNNSTSVTATTSTKKRTRRSVPRDSPLQRSSKYRGVTRHRWTGRYEAHLWDKTCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGQDTILNFPLSTYLNEMKQMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPKNNNGINMINSTSDSIKSTVVSDSDNDNPNCSDTKFTAPSPNPNIYEEHGFNSFITTHQQDSASFSSGDETTTTATASYAQSRQANATSALGLLLQSSKFKEMMEMTSANDFSVATVTAPVKPEESQLPACRFPADIQTYFECEDDSNNNGYGEEDYNTVFSELNNYSFVSPMFNYHNDFET 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1057 397 FunFam AP2-like ethylene-responsive transcription factor 47 113 - -
Alju13g1057 397 FunFam AP2-like ethylene-responsive transcription factor 146 207 - -
Alju13g1057 397 Gene3D AP2/ERF domain 146 207 IPR036955 GO:0003700|GO:0006355
Alju13g1057 397 Gene3D AP2/ERF domain 47 113 IPR036955 GO:0003700|GO:0006355
Alju13g1057 397 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15 281 - -
Alju13g1057 397 CDD AP2 146 207 IPR001471 GO:0003700|GO:0006355
Alju13g1057 397 ProSiteProfiles AP2/ERF domain profile. 48 111 IPR001471 GO:0003700|GO:0006355
Alju13g1057 397 MobiDBLite consensus disorder prediction 1 51 - -
Alju13g1057 397 SUPERFAMILY DNA-binding domain 47 113 IPR016177 GO:0003677
Alju13g1057 397 MobiDBLite consensus disorder prediction 232 258 - -
Alju13g1057 397 ProSiteProfiles AP2/ERF domain profile. 147 205 IPR001471 GO:0003700|GO:0006355
Alju13g1057 397 MobiDBLite consensus disorder prediction 1 31 - -
Alju13g1057 397 Pfam AP2 domain 146 197 IPR001471 GO:0003700|GO:0006355
Alju13g1057 397 Pfam AP2 domain 47 103 IPR001471 GO:0003700|GO:0006355
Alju13g1057 397 PRINTS Ethylene responsive element binding protein signature 187 207 IPR001471 GO:0003700|GO:0006355
Alju13g1057 397 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Alju13g1057 397 SUPERFAMILY DNA-binding domain 146 207 IPR016177 GO:0003677
Alju13g1057 397 SMART rav1_2 48 117 IPR001471 GO:0003700|GO:0006355
Alju13g1057 397 SMART rav1_2 147 211 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1057 Alju-ChrAlju13 29405189 29407989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1057 2 252 AP2-EREBP Transcription Factor Family AT5G57390 52.918 9.69e-84 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Alju13g1057 AP2 2.1e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g1321 06 14275713 14278366 Alju13g1057 13 29405189 29407989 CCT