Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1035 ATGGGCAGAAGCAGAACCTTGTTAGAAGCGCAAGGAGCAACCTTTTTGTCTCCCCCACCGCTGCCGCCGCCGCCATACTTGCTTTCGCCTCCCAACAACGTTGTCGGATCTGAGGATTCCAATGTAAAAGACAACGTAAGCCCCAGCGTACTACTCATCATCATCATCCTCGCCATCGTCTTCTTCGTCTCTGGTTTGCTCCACCTTCTTGTTCGCTATCTATGGCGGCCACAAGCCAGAGACCCAGACGATTTAGACGATGTTACTGTTCTTCAGGGTCAACTTCAACAACTTTTTCACCTCCATGATTCTGGGGTCGACCAAGCCTTCATCGACACCCTCCCTGTTTTCCTCTACAAGGCCATCATCGGACTCAAGAACCCTTTCGATTGCGCCGTTTGTCTGTCGGAATTTGAGCCGGACGACAAGCTCCGATTGTTGCCCAAATGCAGCCACGCGTTCCACATGGAGTGTATCGACACCTGGCTCTTGTCTCACTCCACGTGTCCTATCTGTCGAGCTTGCTTGCTCAATGATTTCTCCTCCAGCAACGCTTGTTCCCCCATTGTTCTGGTCCTTGAATCTGGGAGTGACAACAACTCCAGAGAGATTGACCCGGAAACCGATGAAATCGGATCCGAGTCGACCTGGTTTGGCTCGAATCATCACGATTCCGGTGAAGTGGTTACAGTGAAGCTGGGAAAGATCAGGAATGTGGATAACAACAATGATGAAGGAAGTAGCAGAACTGGTGATATCAACGATAATGCAGAAGCAAGAAGGTGTTTCTCTATGGGGTCTTTTACTTATGTGATGGACGAAAGTTGTTTGCTTCATGTACCCATTAGAGCACAAATCAAAAAGAAGCATGCTTTGTATTTGAATCCAGGAAACAGACTTGCAATGTCAGAGTGTGACTGTGAATCGAGGAGGGATTTCAGGTTCTCTGGTTTAGAAGGGAACAGAGTTGAAGAAGAAGAAGGAACTGCAAAAAGTTCAAGCTCTGGGGTTATTACAAGGAAAGAGAGCTTGTCGGTGTCAAAGATTTGGCTTAGGGAGAAGAAAGAGAAGCGAAGAAATAGGCTTGAGGATTCGACGAGGAGGGCTGTGTCGTTTAGGTTTCCGTTGCAGAGAAATGAAGATGAAGATGATGGTGGTGGTTTGAAGGAGAGGAATGGGAAATTGGGATCGAGAAGTACGATTTCTGAGATGGATATTACAAAATGGGAAGAAAACAATGGAGGAGGAGGAAGTAGTGAATATGGATATGATGAAGAAAACCAGAGTTGTTACAGTGTAGATTCTTCGCAGGTTATTAGAGCTCCTTCGTTTGCAAGAAGAACTCTAACTTGGCTCACAGGAAGACGACAGCATCAGAACAAGGTTGTTCATTCATCCTCTGTTTCTGGAGATTTGTAG 1419 0.4658 MGRSRTLLEAQGATFLSPPPLPPPPYLLSPPNNVVGSEDSNVKDNVSPSVLLIIIILAIVFFVSGLLHLLVRYLWRPQARDPDDLDDVTVLQGQLQQLFHLHDSGVDQAFIDTLPVFLYKAIIGLKNPFDCAVCLSEFEPDDKLRLLPKCSHAFHMECIDTWLLSHSTCPICRACLLNDFSSSNACSPIVLVLESGSDNNSREIDPETDEIGSESTWFGSNHHDSGEVVTVKLGKIRNVDNNNDEGSSRTGDINDNAEARRCFSMGSFTYVMDESCLLHVPIRAQIKKKHALYLNPGNRLAMSECDCESRRDFRFSGLEGNRVEEEEGTAKSSSSGVITRKESLSVSKIWLREKKEKRRNRLEDSTRRAVSFRFPLQRNEDEDDGGGLKERNGKLGSRSTISEMDITKWEENNGGGGSSEYGYDEENQSCYSVDSSQVIRAPSFARRTLTWLTGRRQHQNKVVHSSSVSGDL 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1035 472 CDD RING-H2_EL5-like 130 173 - -
Alju13g1035 472 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Alju13g1035 472 MobiDBLite consensus disorder prediction 373 425 - -
Alju13g1035 472 SMART ring_2 131 172 IPR001841 -
Alju13g1035 472 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 43 350 - -
Alju13g1035 472 MobiDBLite consensus disorder prediction 13 32 - -
Alju13g1035 472 FunFam RING-H2 finger protein ATL46 93 178 - -
Alju13g1035 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 180 IPR013083 -
Alju13g1035 472 MobiDBLite consensus disorder prediction 16 30 - -
Alju13g1035 472 SUPERFAMILY RING/U-box 110 180 - -
Alju13g1035 472 Pfam Ring finger domain 130 173 IPR001841 -
Alju13g1035 472 MobiDBLite consensus disorder prediction 373 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1035 Alju-ChrAlju13 29167359 29168777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1035 40 467 C3H Transcription Factor Family AT2G18650 42.048 1.17e-81 257