Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1012 ATGGCAAGCCCCAATTACTATTATGGCTGCTTTCTAATAATTACTTGTGTTGCCTTGTTAACAGCTGAGATTGGAGTTGCAGGCGATGATGAAGCAGGGTCACTACTAGGAGGGAAGAAGTTAATAATTGGACTTCCTAAGAAGTCAGGCTTCACCCAGTTTGTGGATTTACAGCTCAATTCTAGTAATAAGACACAGGTCGTCAAGGCAACAGGCTATTCCATTGAAGTCTTCGAAGCTGTAATAGCTTTCCTTAAGAGTTCTCATTACAATATTTCTTTCGAGTTCAAAGCTTTTGCAGATGAAGATGGAAACAGTGCTGGGAATTACGATGCACTCGTCTATCAGGTTTATAAAGGACAGTATGATGCTGTGGTTGGAGATGTGTCGATTGTGGCAAATCGGTCAAACTATGTTGATTTTACATTACCATATGCACCGTCTGATGTGAAGATGCTTGTGAAGGTTCGACATGATCCACGCTTAAATATGTGGAATTTTGTGCGACCATTTAGTTGGGATCTATGGTTGTCTATTGCCATCTTCAGTATTTTCATAGGAGGTATCATATTCCTCATGGAAGGTAGTGTCAAGCAAAATTCAGCATTTGAAAATTCACCATATAAGAAACAACTCAGTGGAGTTTTTTCTATCTTGTGGCTTCCAGTAGAACAAGCAATTCTTCCTCAAAGAGAATCATTGGTCAAGAATTGCTCTAAGTTTGTGCTGGTGTTGTGGTTGATACTCGCATTTGTGCTGATGCAAAGTTACACAGCAAACTTGTCATCAATATTAACAGTACATCAGCTACAACCTTGTTATCCTAGTGAGAATGACGTTATTAGAGACCCTAACATCAATGTTGGGTACCACACTGACTCATTCATTGGAGGTTTACTGGGTATCACAGTAAATGATTCGAGGGTGAAGAACTACCCTGACGCTAAAGAATATAAGGAGGCTTTGGACAAAGGAAGCCGTGAAGGTGGTGTTGATGCTATTTTTGATCATATTTCACACATTAAGATCTTCCTAAAGCAATATGGCTCCAATAATTATGCCATGGTCGATACTAGACATCATATTGCAGGATTTGCTTATGCATTCCCCATAGGCTCCAACTTAACCTCGTACTTTTCTAGAGCCATATTGAATGTGAGAGAGAGTGAAGAAATGAACAAGATTGAGGCATATTATTTTGGAAGCAATCAAGAGGACAATGAAGGCCTAGGCTTATCTACATCATCAGACAATGAAAGTTTCGAACTTACCACTTATAGCTTTGCAGGTTTGTTCATGGTAATTGGAATTCTTTCACTGTTAGCTTTGGTAGTCTCTGAAAGTCATATTTGGCGAAAACATCTTGTGCTGGCGAAAACGTATAGCCAACAATGGTTGATGAGTTGGAGTTTTAGAAGAACTGGTCCATTAGAGGGAAGTTCTCCATCAAGACGAAATGTTGATGGACAAGGTTATACAACCAGAGAAAATAATCAAAATATTGTATTGGAAGTGGATCACATATAA 1527 0.391 MASPNYYYGCFLIITCVALLTAEIGVAGDDEAGSLLGGKKLIIGLPKKSGFTQFVDLQLNSSNKTQVVKATGYSIEVFEAVIAFLKSSHYNISFEFKAFADEDGNSAGNYDALVYQVYKGQYDAVVGDVSIVANRSNYVDFTLPYAPSDVKMLVKVRHDPRLNMWNFVRPFSWDLWLSIAIFSIFIGGIIFLMEGSVKQNSAFENSPYKKQLSGVFSILWLPVEQAILPQRESLVKNCSKFVLVLWLILAFVLMQSYTANLSSILTVHQLQPCYPSENDVIRDPNINVGYHTDSFIGGLLGITVNDSRVKNYPDAKEYKEALDKGSREGGVDAIFDHISHIKIFLKQYGSNNYAMVDTRHHIAGFAYAFPIGSNLTSYFSRAILNVRESEEMNKIEAYYFGSNQEDNEGLGLSTSSDNESFELTTYSFAGLFMVIGILSLLALVVSESHIWRKHLVLAKTYSQQWLMSWSFRRTGPLEGSSPSRRNVDGQGYTTRENNQNIVLEVDHI 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1012 508 Pfam Ligand-gated ion channel 402 437 IPR001320 GO:0015276|GO:0016020
Alju13g1012 508 Pfam Bacterial extracellular solute-binding proteins, family 3 69 401 IPR001638 -
Alju13g1012 508 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 38 453 IPR015683 -
Alju13g1012 508 SMART GluR_14 40 402 IPR001320 GO:0015276|GO:0016020
Alju13g1012 508 SUPERFAMILY Periplasmic binding protein-like II 13 403 - -
Alju13g1012 508 Gene3D - 34 164 - -
Alju13g1012 508 FunFam Glutamate receptor 37 162 - -
Alju13g1012 508 Gene3D - 165 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1012 Alju-ChrAlju13 28795370 28798823 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1012 38 454 Ion Channels AT2G29120 40.191 1.06e-79 266