Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1004 ATGGCCAACCCAAATCACTATTACCATAGTTACCTTATAATGATTTATTGTGTTGTGTTGTTAACATCTCAGATTAGAGGAAGCGACGATGAGGCAGGGTCGTCACTCCTAGGAGGGAAGAAGTTGATAATTGGTGTACCTAAGAAAGTAAGGTTCATCCAATTTGTTGATACACAACTGAATCCTTTGAACAAGACACAGCTCGTGAATGTTACTGGCTATTCTATTGACGTTTTCTTGGCTACCATAGCTTACCTTCGGCGTTCAAATTACAATATTTCTTTTGAGTTTCGTGCTTTCGTGGACAACAATGGGAACACTCCTGGGGGTTACGAAGCTCTCGTCCACCAGGTTCACCAAAGAAAGTACGATGCAGCAGTGGCAGATTTGACGATTGTGGCAAATAGGTCAAACTTCGTAGATTTTAAGTTGCCATATGCACAGTCTGATGTGAGGATGCTTGTGAAAGTTCAACAGGGTCATCGCTTGAACATGTGGATCTTTTTACGACCTTTTAGCTGGGACATGTGGTTGTGCATTGTCATGGTCTTTATTTTTACAGGGGCTGTCATACTATTCATGGAACGCAATGTCAATAATAAGGAAGATTCAACACTTGAAAAGTCCGCCATTAAGAAACAACTTAGTGGGATTTCTATCCTCTGGTTTCCCATAGTGCAAGCAGTTTTTCCTGAAAGACAATCATTGGCCAAGAATTGCTCTAGGTTCGTGCTTGTGTTATGGTTGATTCTAGTATTTGTACTAATGCAAAGTTACTCAGCATGCTTGTCTTCAATCTTGACCGTACATCAGCTCCAATCTCGTTACCCTAGTGAGTACGAAATTAGAACAGATCCCAACATTTACGTAGGATACCACTATGGCTCATTCATCGATGCCTTATTGGTCGATAGCTTGAAGGTTGATAGGTCAAGGTTGAAGGATTATGCTGGTATCAAACAATATAAGGAGGCTTTAGATAAAGGAAGTCGTAATGGTGGTGTGGATGCCATTTTTGATGAAGTTCCCTACATTAAAGTCTTCCTTAAGGAATGTGGTTCCAATTATGCCATGGTAGGGCCTAGGCATCGCACCGGTGGATTTGGCTTTGCATTTAGTAAGAATTCCACCTTAACCTCGCACTTTTCTCGAGCCATACTAAATGTAATTGAGAGCAATGAAATGGACGAGATTGAGGAGAGATATTTTAAAGGTCATGAAGATGAAGATGGCATATCTACTCCAACAACGTTAGATGATGATAGTGACAGCCTCACCACATATAGCTTTGCAGGGTTGTTTGTGGTATTTGGAATTCTTTCACTGTTAGCTTTGTTAGTCTCCAAACATCGTATTTGGAGAAGACAATTTATGCTTATGAAAATGTCTAGCGAAAAATTCTTGCGCTGTCGGAGTTCTTCGGTAACTAATATGTCAGAAGAAGGTTCTACAACAACAAGAAGAATTGTTGACGATGATGATGATGGAGAAGGTTCTAGAAGCAGAGAAAATTTTGGATCAGGACGACATGCAGAATATAACCACGCAAGGATATTAGTGGCATCTCTTCCCTAA 1575 0.4051 MANPNHYYHSYLIMIYCVVLLTSQIRGSDDEAGSSLLGGKKLIIGVPKKVRFIQFVDTQLNPLNKTQLVNVTGYSIDVFLATIAYLRRSNYNISFEFRAFVDNNGNTPGGYEALVHQVHQRKYDAAVADLTIVANRSNFVDFKLPYAQSDVRMLVKVQQGHRLNMWIFLRPFSWDMWLCIVMVFIFTGAVILFMERNVNNKEDSTLEKSAIKKQLSGISILWFPIVQAVFPERQSLAKNCSRFVLVLWLILVFVLMQSYSACLSSILTVHQLQSRYPSEYEIRTDPNIYVGYHYGSFIDALLVDSLKVDRSRLKDYAGIKQYKEALDKGSRNGGVDAIFDEVPYIKVFLKECGSNYAMVGPRHRTGGFGFAFSKNSTLTSHFSRAILNVIESNEMDEIEERYFKGHEDEDGISTPTTLDDDSDSLTTYSFAGLFVVFGILSLLALLVSKHRIWRRQFMLMKMSSEKFLRCRSSSVTNMSEEGSTTTRRIVDDDDDGEGSRSRENFGSGRHAEYNHARILVASLP 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1004 524 MobiDBLite consensus disorder prediction 485 507 - -
Alju13g1004 524 MobiDBLite consensus disorder prediction 478 507 - -
Alju13g1004 524 SUPERFAMILY Periplasmic binding protein-like II 27 404 - -
Alju13g1004 524 Pfam Ligand-gated ion channel 405 439 IPR001320 GO:0015276|GO:0016020
Alju13g1004 524 Pfam Bacterial extracellular solute-binding proteins, family 3 99 404 IPR001638 -
Alju13g1004 524 Gene3D - 319 368 - -
Alju13g1004 524 Gene3D - 369 403 - -
Alju13g1004 524 SMART GluR_14 41 405 IPR001320 GO:0015276|GO:0016020
Alju13g1004 524 Gene3D - 165 290 - -
Alju13g1004 524 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 38 455 IPR015683 -
Alju13g1004 524 Gene3D - 34 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1004 Alju-ChrAlju13 28623794 28628142 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1004 39 447 Ion Channels AT2G29120 38.780 3.46e-74 251