Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1003 ATGGCCAATCCAAATCACTATTACCATAGTTATTACCTTATAATGATTTATTGTGCTGTGTTGTTAACAGCTAAGATTCGAGGAAGCGACGATGAGGCAGGGTTGTCACTTCTAGGAGGGAAGAAGTTGATAATTGGTGTACCTAAGAAAGTAAGCTTCATCCAATTTGTGGATACACAACTGAATCCTTTGAACAAGACACAGCTCGTGAATGTCACTGGCTATTCTATTGACGTTTTCTTGGCGACCATAGCTTACCTTCGGCGTTCAAATTACAATATTTCTTTTGAGTTTCGTGCTTTTGTGGACAACAATGGAAATACTACAGGGGGTTACGATGCTCTCGTCTACCAGGTTCACCAAGGAAAGTACGATGCAGCAGTGGCAGATTTGACGATTGTGGCAAATAGGTCAAACTTCGTAGATTTTACGTTGCCATATGCACAGTCTGATGTGAGGATGCTTGTGAAAGTTCAACATGGTCATCGCTTGAACATGTGGATCTTTGTACGACCATTTAGCTGGGACATGTGGTTGTGCATTGTCATGGTCTTTATTTTTACAGGGGCTGTCATACTATTCATGGAACGCAATGTCAACATGGAAGTTTCAACACTTAAAAAGTCTCCCATTAAGAAACAACTTAGTGGGACTTCTATCCTCTGGCTTCCCGTAATGCAAGCAGTTTTTCCTGAAAGAGAATCATTGGCCAAGAATTGCTCCAGGTTTGTGCTTGTGTTGTGGTTGATTCTAGTATTTGTACTAATGCAAAGTTACTCAGCATGCTTGTCTTCAATCTTGACCGTACATCAGCTCCAATCTCGTTACCCTAGTGAGTATGAAATTAGAACAGATCCCAACATTTACGAAGGATACAACTATGGCTCATTCGTCGGCGGCTTATTGGTCGATAGCTTGAAGGTTGATAGGTCAAGGTTGAAGGATTATGTTGGCATCAAACAATATAAGGAGGCCTTAGATAAAGGAAGTCTTAATGGTGGTGTGGAGGCCATTTTTGATGAAGTTCCCTACATTAAAGTCTTCCTTAAGGAATGTGGTTCCAATTATGCCATGGTAGGGCCTAGGCATCGCACCGGTGGATTTGGCTTTGCATTTAGTAAGAATTCCAACTTAACCTCACACTTTTCTCGAGCCATACTAAATGTAAGTGAGAGCAATGAAATGGACGAGATTGAGGAGAGATATTTTAAAGGTCATGAAGATGAAGATGGCATATCTACTCCATCAACGTTAGATGATGATAGTGACAGCCTCACTACATATAGCTTTGCAGGGTTGTTTGTGGTTCTAGAAGCAGAGAAAAGATTGGATCAGGACGACATGCAGAATATAACTACGCAAGGATATTAG 1371 0.4106 MANPNHYYHSYYLIMIYCAVLLTAKIRGSDDEAGLSLLGGKKLIIGVPKKVSFIQFVDTQLNPLNKTQLVNVTGYSIDVFLATIAYLRRSNYNISFEFRAFVDNNGNTTGGYDALVYQVHQGKYDAAVADLTIVANRSNFVDFTLPYAQSDVRMLVKVQHGHRLNMWIFVRPFSWDMWLCIVMVFIFTGAVILFMERNVNMEVSTLKKSPIKKQLSGTSILWLPVMQAVFPERESLAKNCSRFVLVLWLILVFVLMQSYSACLSSILTVHQLQSRYPSEYEIRTDPNIYEGYNYGSFVGGLLVDSLKVDRSRLKDYVGIKQYKEALDKGSLNGGVEAIFDEVPYIKVFLKECGSNYAMVGPRHRTGGFGFAFSKNSNLTSHFSRAILNVSESNEMDEIEERYFKGHEDEDGISTPSTLDDDSDSLTTYSFAGLFVVLEAEKRLDQDDMQNITTQGY 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1003 456 FunFam Glutamate receptor 39 164 - -
Alju13g1003 456 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 436 IPR015683 -
Alju13g1003 456 CDD GluR_Plant 41 403 - -
Alju13g1003 456 Pfam Ligand-gated ion channel 405 437 IPR001320 GO:0015276|GO:0016020
Alju13g1003 456 SUPERFAMILY Periplasmic binding protein-like II 37 404 - -
Alju13g1003 456 Gene3D - 369 403 - -
Alju13g1003 456 Gene3D - 318 368 - -
Alju13g1003 456 Gene3D - 168 288 - -
Alju13g1003 456 Gene3D - 36 167 - -
Alju13g1003 456 SMART GluR_14 42 405 IPR001320 GO:0015276|GO:0016020
Alju13g1003 456 Pfam Bacterial extracellular solute-binding proteins, family 3 72 404 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1003 Alju-ChrAlju13 28570843 28575301 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1003 40 404 Ion Channels AT2G29120 40.710 7.08e-75 251