Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1001 ATGGGAATCGAGAGGGGAAGCCTCAAGGGCTTGCGCGGCGGCTGGACGTTGCCGCCGAAGCCCTGTGACTCTTGCAAATCGGCAGCCGCCGCGGTTTTCTGCAGAGCCGACTCTGCTTTTCTGTGTATGCTCTGTGACAACAAGATTCACTCTGCCAATAAGCTTGCGTCGCGGCATGAGCGTGTGTGGATGTGCGAGGTTTGCGAGCAAGTCCCTGCCTCCGTCACGTGCAAGGCCGACGCCGCCGTGCTCTGCGTCACTTGCGATTCGGATATCCACTCCGCTAACCCGCTGGCTCGCCGTCACGAGCGTGTTCCCGTGGAGCCTTTCTTCGATCCCGCAGACTTTGTGGCGAAATCTTCCGCTGCTGCCTTTAATTTGTTGGTTCCAAACGATAACGGAATTGGATTCCCTCAGGAAGAATCCGAATCCGCGTCATGGCTAATTTCTAATCCGAATTTCAACCCGAAGATCATGGATGTTCCGGATATCAAATCGGGCGAGCTGTTTTTCCCTGAAATGGAGTATCCATTCATTGATTTCGGTTACTCAAACTCATTCGATCAGAATAACAATAACAGAGCGGGGAACAACGATAGCGTAGTTCCCGTTAAAGCTCCGGTTGTGAATCACACAGAGAATTGCTTCGACATCGATTTTTGCAGATCGAAGCTCTCTTCAATTAGCTATCCAACGCAGTCGTTTAGTCGCCAAAGTATATCTTCTTCTTCGGTTGATGTTGGAGTGGTGCCGGACGGAGGAAACATGGTGTCAGAAATCTCATTACCGTTCGGCGGCAACATGAATAACAGCTCGGAATCAAGCGGAATCATATCGGCCGGCAATTCCTCAAACCAATCGAGAAGTTCGCTGAGTGGTATGAACCGGGAAGCTCGGGTTTTGAGATACAGGGAGAAGAGGAAGAACAGGAAGTTTGAGAAAACCATCCGATACGCTTCGCGAAAGGCTTATGCAGAAACTCGGCCGAGGATCAAAGGCCGGTTCGCCAAACGGACCGAAATGGAGTCGGATTTCGACCGGTTATTCAGCTCGGTCGACCCCACCACAGATCTATTGCTTGATACTCAGTACGGCGTCGTCCCCTCCTTTTAA 1113 0.5139 MGIERGSLKGLRGGWTLPPKPCDSCKSAAAAVFCRADSAFLCMLCDNKIHSANKLASRHERVWMCEVCEQVPASVTCKADAAVLCVTCDSDIHSANPLARRHERVPVEPFFDPADFVAKSSAAAFNLLVPNDNGIGFPQEESESASWLISNPNFNPKIMDVPDIKSGELFFPEMEYPFIDFGYSNSFDQNNNNRAGNNDSVVPVKAPVVNHTENCFDIDFCRSKLSSISYPTQSFSRQSISSSSVDVGVVPDGGNMVSEISLPFGGNMNNSSESSGIISAGNSSNQSRSSLSGMNREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEMESDFDRLFSSVDPTTDLLLDTQYGVVPSF 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1001 370 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 351 IPR045281 GO:0009909
Alju13g1001 370 Pfam CCT motif 296 338 IPR010402 GO:0005515
Alju13g1001 370 CDD Bbox1_BBX-like 65 107 - -
Alju13g1001 370 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Alju13g1001 370 CDD Bbox1_BBX-like 21 64 - -
Alju13g1001 370 Pfam B-box zinc finger 20 61 IPR000315 GO:0008270
Alju13g1001 370 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Alju13g1001 370 MobiDBLite consensus disorder prediction 273 295 - -
Alju13g1001 370 MobiDBLite consensus disorder prediction 273 294 - -
Alju13g1001 370 ProSiteProfiles CCT domain profile. 296 338 IPR010402 GO:0005515
Alju13g1001 370 ProSiteProfiles Zinc finger B-box type profile. 22 64 IPR000315 GO:0008270
Alju13g1001 370 SMART bboxneu5 17 64 IPR000315 GO:0008270
Alju13g1001 370 SMART bboxneu5 65 107 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1001 Alju-ChrAlju13 28456882 28458091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1001 1 370 C2C2-CO-like Transcription Factor Family AT5G57660 51.823 5.12e-112 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Alju13g1001 zf-B_box 1.5e-06 No_clan