Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g0990 ATGAGTTTCCACCCTAATACTTCTCTTCACTTAAATCTCCCAGCAGACGACAATAATAATGCTTCATTACTGAACCTAAATTTTCTTCTTGAGCCTCCTCCTCCTCCTCCTTCTTCTGCAGGTTCCAACTCCAAGGAGCCCAGAGTATTTTCGTGCAATTATTGCCAGAGAAAATTCTACAGCTCTCAAGCTCTAGGGGGTCATCAAAATGCTCACAAGCTTGAACGAACCCTAGCCAAGAAAAGCAGAGAGCTAATAAGTAATTCTACTTCTTCTTATTCCATTAATGATCCTTACAACAATAATAATGGCGGATCAGGAGGAGGATCCAACCCTTATCTCGGCCATCGGGTCGGGTCATCGGATCTTGGCGTGTTCGTGAACCAAGGTCAAGGTGGAGGAAGGACGGCCACGAGGGATTTTGGCTATGGATCCAAGGAAATTGTTCAGGAGGATATTAACCAGCTTGACCTCTCTTTAAGGCTCTAG 489 0.4479 MSFHPNTSLHLNLPADDNNNASLLNLNFLLEPPPPPPSSAGSNSKEPRVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELISNSTSSYSINDPYNNNNGGSGGGSNPYLGHRVGSSDLGVFVNQGQGGGRTATRDFGYGSKEIVQEDINQLDLSLRL 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g0990 162 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
Alju13g0990 162 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 77 IPR013087 -
Alju13g0990 162 Gene3D Classic Zinc Finger 38 104 - -
Alju13g0990 162 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 9 125 IPR044246 GO:0009788
Alju13g0990 162 MobiDBLite consensus disorder prediction 89 114 - -
Alju13g0990 162 MobiDBLite consensus disorder prediction 89 109 - -
Alju13g0990 162 FunFam Zinc finger protein 2 36 96 - -
Alju13g0990 162 SUPERFAMILY beta-beta-alpha zinc fingers 47 77 IPR036236 -
Alju13g0990 162 MobiDBLite consensus disorder prediction 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g0990 Alju-ChrAlju13 28372557 28373045 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g0990 1 99 C2H2 Transcription Factor Family AT5G57520 59.615 3.93e-30 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju13g0990 None None None