Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g0961 ATGGATTCCTCCTCCTCTTCTTCCTCCTCTAACTGGCTCGCTTTCTCTCTCTCCCACCCCTTATCTTCCACCTCCCACTTCCCTCTCTTCCCTTCCTTCACCTCCCCTTCCCCTACCCCCACTCTGTCTCTCACAGGTAACACCACCGTCGTCGACGCGACGGCCGAAACCAAAGATGGTGGTGCGGTCACAGGAGCACCGACTAGCCTCTCCATGTTCACTGGGGGACCTAAGTTTGAGGACTTCCTCGGCGGAGCCGCAGCCTCAACCGCCGCCGCTCCCACAGCTCCCGCACCGCCTCCGCAGTTCTCCATCGACAACACGCTGAGCACGGTGGTTGAGAACGAGATATACGATTCCGAGCTGAAAACCATAGCCGCAAGCTTCCTTCGTGGCTTCGCTTCCGGAGGAGGGCAAGCTGAGCCGCAACAGAAACAGGCTCAGTTGATCCCGATAGAGCCGTCGCCGAAGAAGAGCGTCGACAACTTCGGCCAACGCACCTCCATCTACCGCGGCGTCACACGGCACAGATGGACAGGAAGGTACGAAGCTCATCTGTGGGATAACAGTTGCAGAAGGGAGGGGCAAAGTCGGAAAGGAAGACAAGGTGGCTACGATAAGGAAGAGAAGGCAGCCAGGGCTTATGATCTCGCCGCTCTCAAGTACTGGGGTCCGACAACCACCACCAACTTTCCGATTTCAAACTACCAGAAGGAACTGGAAGAGATGAAGAATATGACAAGGCAGGAATTTGTCGCTTCTCTTCGAAGGAGGAGTAGTGGATTCTCGAGAGGCGCCTCAATATATAGAGGAGTGACGAGGCATCACCAGCATGGCCGGTGGCAGGCAAGAATAGGCAGAGTCGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGTACTCAAGAGGAAGCAGCGGAGGCGTATGATATAGCGGCCATTAAGTTCAGAGGAATCAACGCAGTGACCAACTTTGACATGAGCCGTTACGACGTGAAGAGCATTGCCAACAGTAGACTTCCCATCGGCGGACTCTCTGGCAAGACCAAGAACACGACGGATTCTTCTCTGTCCGACCACCACCACACCAGCAAGAGCCCTGACGCCGACCGAGACCTCTCCTCCATCAACTCCTCGGTCACTTTCGCATCCCAACCGCCACAGCCACTGCCACTGCCACTGCCACCGCCACCTTCAAGCACTAATAATTCTCTCACCTTCGCCATACCCATCAAACAGGACACTACTTCAGATCATCATTACTGGTCCTCCGTTCTCGCCGGTTACAACAAAAACCCTACCTTGATCCAGCCATCTTCCTCCACCAATGGCTCCGTGACATCTGTCCTACCCTTCAATGTGGACCTCTCTACAGCTCCCTCCAGTACTAGCAGTGAAGGAAACAACATCAACAACAATAATCATAATAATGGGTTTTTCAGTGGAGGAGGCATGCTTGTTCATCAGCAACAACAACAAAGTGGGAATAACAATAACAATAATAATAACAACAACAACAATGGTGGTGGTTCGTCGTCGTCTTCTTCTGGATCGAGTTCATTGATGATCCCATTGGCCACGCCCATTACCTTAAATAGTGACCCTAGTTATGAGAGCTCTTCTTCTGGTTATGGAAACTGGAGCATCATTGGGCCTACCCTGCACACCTTCCAAACCCATGCAAAACCCAGTCTCTTTCAAACCCCGATTTTTGGCATAGAATAA 1725 0.5252 MDSSSSSSSSNWLAFSLSHPLSSTSHFPLFPSFTSPSPTPTLSLTGNTTVVDATAETKDGGAVTGAPTSLSMFTGGPKFEDFLGGAAASTAAAPTAPAPPPQFSIDNTLSTVVENEIYDSELKTIAASFLRGFASGGGQAEPQQKQAQLIPIEPSPKKSVDNFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYQKELEEMKNMTRQEFVASLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGINAVTNFDMSRYDVKSIANSRLPIGGLSGKTKNTTDSSLSDHHHTSKSPDADRDLSSINSSVTFASQPPQPLPLPLPPPPSSTNNSLTFAIPIKQDTTSDHHYWSSVLAGYNKNPTLIQPSSSTNGSVTSVLPFNVDLSTAPSSTSSEGNNINNNNHNNGFFSGGGMLVHQQQQQSGNNNNNNNNNNNNGGGSSSSSSGSSSLMIPLATPITLNSDPSYESSSSGYGNWSIIGPTLHTFQTHAKPSLFQTPIFGIE 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g0961 574 Gene3D AP2/ERF domain 169 234 IPR036955 GO:0003700|GO:0006355
Alju13g0961 574 Gene3D AP2/ERF domain 268 328 IPR036955 GO:0003700|GO:0006355
Alju13g0961 574 CDD AP2 168 234 IPR001471 GO:0003700|GO:0006355
Alju13g0961 574 MobiDBLite consensus disorder prediction 341 405 - -
Alju13g0961 574 PRINTS Ethylene responsive element binding protein signature 170 181 IPR001471 GO:0003700|GO:0006355
Alju13g0961 574 PRINTS Ethylene responsive element binding protein signature 308 328 IPR001471 GO:0003700|GO:0006355
Alju13g0961 574 SMART rav1_2 268 332 IPR001471 GO:0003700|GO:0006355
Alju13g0961 574 SMART rav1_2 169 238 IPR001471 GO:0003700|GO:0006355
Alju13g0961 574 ProSiteProfiles AP2/ERF domain profile. 268 326 IPR001471 GO:0003700|GO:0006355
Alju13g0961 574 FunFam AP2-like ethylene-responsive transcription factor ANT 168 234 - -
Alju13g0961 574 MobiDBLite consensus disorder prediction 354 369 - -
Alju13g0961 574 ProSiteProfiles AP2/ERF domain profile. 169 232 IPR001471 GO:0003700|GO:0006355
Alju13g0961 574 MobiDBLite consensus disorder prediction 370 385 - -
Alju13g0961 574 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 124 457 - -
Alju13g0961 574 Pfam AP2 domain 169 224 IPR001471 GO:0003700|GO:0006355
Alju13g0961 574 Pfam AP2 domain 268 318 IPR001471 GO:0003700|GO:0006355
Alju13g0961 574 FunFam AP2-like ethylene-responsive transcription factor 267 328 - -
Alju13g0961 574 MobiDBLite consensus disorder prediction 459 521 - -
Alju13g0961 574 SUPERFAMILY DNA-binding domain 267 328 IPR016177 GO:0003677
Alju13g0961 574 MobiDBLite consensus disorder prediction 386 400 - -
Alju13g0961 574 SUPERFAMILY DNA-binding domain 168 234 IPR016177 GO:0003677
Alju13g0961 574 CDD AP2 267 328 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g0961 Alju-ChrAlju13 28087512 28090643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g0961 116 433 AP2-EREBP Transcription Factor Family AT5G57390 64.035 6.28e-140 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Alju13g0961 AP2 1.1e-09 CL0081