Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g0954 ATGATTCCGAGAAAGTTTGTGAAGAAATATGGGGATGTATTCTCTGACACACTGTTTCTAAAGCTTCCAAATGGTGAAGAGTGGAAAGTAAATGTGGGAAGAAGAAATAATGGAGATGTTTGGCTTGAGAATGGATGGAGAGAATTTGCAGAGTATCATTCTCTCTTCAAGGGACGATTATTAGTGTTTGGGTATGACGATACGTATTCTAATCGTTTAAACGTTATAATAATGGACCTCACAACTTCAGAAGAAATAGAGTATCCTTCAAATCATGGCGTTGAAGCTAAGCACGTCGGCAATGAGCAACAAGAAGAATCACCCACAAGAAAGAAGGGCAGAAATCTTAAAAGTGGCAAAGGTGTTATACGAGTACTTGTCTCTTTCATTAACTGTATACCTGGGAGCCAACGAGGCAGGTTTAATTCTAAGGTCCTGAAAGTGAAAGGTGAAGTTGTCGACGGCAATGGAGGAAGAGCACTTGAGAGAGCTAAAGCTTTCAAATCTCAATCTCAAAATCCTTCTTTCATATTTGTTGCTAGACCATCGTACATTAATACTGCTTGTCAAGTGGCTATACCATCAAAGTTTGCCATAAAGTTCTTGGCTTCAAACAAGAGTGGACAAAGTACGAATCTTTGGACTTCGAATGGGAGGGTTTGGATCACTAAGTTCATCACAAGGAAACAGGGGATAAGAACAATATTTGAACTCTCTACCAGTGGTTGGAAGCCATTTGTGAAGGACAATGACTTGAAAGTAGATGATGTTTGTGTTTTTGAGCTCATCAAAGGACCAACTCATGAACTCAATTTTCGGGTTTCAATCTTTCGAAATATGAACAATCCTTCAGATAATGCTCCTTTGTCTCAATCACAAGCTACAGGAAAACATACACAGAAAAAAGAGAGGGTGAAAACTAAAACAGAGACTAGTACTGAGGAGTTTCAAGTTCCTCCAAAAAAGCCTAAACTAACAAAAGCTACTTCTTATAAAGAAGCTGCTGCTAATAGTTTCAACTCAGAAAACCCCTTCTTCAAAGTAACCATAGGATTTTCCCATGCTCAGGCAATACCAATTACTTTCTTAAGGAAGTATTGGAAACAGGGGAAACATGTTGTAGAGCTGCAGGTTAAGGATAGATCAAGGAGGGTTAAGTTGGTCAGAACTTGTGGATCCCGTTCACCGGATTTTGGGTTCTTTTCAGAAGGATGGGCTGCTTTTGCAAGAGAGAATGATTTGCAAGTTGGAGATGAATGCTTCTTTGAGCTTGTGAATAGGGGTCACATTCATGTCTTGAAAGTTTCCATTTTCAAACATTCCTCACCTTAA 1332 0.3919 MIPRKFVKKYGDVFSDTLFLKLPNGEEWKVNVGRRNNGDVWLENGWREFAEYHSLFKGRLLVFGYDDTYSNRLNVIIMDLTTSEEIEYPSNHGVEAKHVGNEQQEESPTRKKGRNLKSGKGVIRVLVSFINCIPGSQRGRFNSKVLKVKGEVVDGNGGRALERAKAFKSQSQNPSFIFVARPSYINTACQVAIPSKFAIKFLASNKSGQSTNLWTSNGRVWITKFITRKQGIRTIFELSTSGWKPFVKDNDLKVDDVCVFELIKGPTHELNFRVSIFRNMNNPSDNAPLSQSQATGKHTQKKERVKTKTETSTEEFQVPPKKPKLTKATSYKEAAANSFNSENPFFKVTIGFSHAQAIPITFLRKYWKQGKHVVELQVKDRSRRVKLVRTCGSRSPDFGFFSEGWAAFARENDLQVGDECFFELVNRGHIHVLKVSIFKHSSP 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g0954 443 CDD B3_DNA 174 278 IPR003340 GO:0003677
Alju13g0954 443 Gene3D - 154 281 IPR015300 -
Alju13g0954 443 Gene3D - 326 441 IPR015300 -
Alju13g0954 443 CDD B3_DNA 1 77 IPR003340 GO:0003677
Alju13g0954 443 Pfam B3 DNA binding domain 1 78 IPR003340 GO:0003677
Alju13g0954 443 Pfam B3 DNA binding domain 354 440 IPR003340 GO:0003677
Alju13g0954 443 Pfam B3 DNA binding domain 179 279 IPR003340 GO:0003677
Alju13g0954 443 ProSiteProfiles B3 DNA-binding domain profile. 176 280 IPR003340 GO:0003677
Alju13g0954 443 MobiDBLite consensus disorder prediction 297 321 - -
Alju13g0954 443 SUPERFAMILY DNA-binding pseudobarrel domain 170 278 IPR015300 -
Alju13g0954 443 MobiDBLite consensus disorder prediction 283 323 - -
Alju13g0954 443 SUPERFAMILY DNA-binding pseudobarrel domain 1 79 IPR015300 -
Alju13g0954 443 CDD B3_DNA 345 439 IPR003340 GO:0003677
Alju13g0954 443 Gene3D - 1 82 IPR015300 -
Alju13g0954 443 ProSiteProfiles B3 DNA-binding domain profile. 1 81 IPR003340 GO:0003677
Alju13g0954 443 SUPERFAMILY DNA-binding pseudobarrel domain 340 434 IPR015300 -
Alju13g0954 443 ProSiteProfiles B3 DNA-binding domain profile. 341 441 IPR003340 GO:0003677
Alju13g0954 443 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 301 440 IPR044837 -
Alju13g0954 443 SMART B3_2 345 441 IPR003340 GO:0003677
Alju13g0954 443 SMART B3_2 1 81 IPR003340 GO:0003677
Alju13g0954 443 SMART B3_2 178 280 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g0954 Alju-ChrAlju13 27956018 27960561 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g0954 335 439 B3 DNA Binding Superfamily AT3G18990 32.727 1.36e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju13g0954 B3 6.8e-17 CL0405