Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g0906 ATGGAGAATCTCCCCGACGAATTCAAGCATTACTGGGAGACACACATGTTCTACCAAACTGAAGAGCTCGACAGCTGGGGATTGGACGAGGCAATCTCCGGGTACTACGATTCGAGCTCACCGGACGGCAACGCTTCGTCGTCGATGGCTTCCAAGAACATCGTCTCGGAGAGGAATCGCCGGAAGAAGCTCAACGAACGCCTCTTCGCTCTCAGAGCAGTGGTTCCCAATATTAGCAAGATGGATAAGGCATCGATATTAAAGGATGCGATTGAGTACATTCAAAACTTGCACGAACAAGAGAAGAGCATCGAAGCAGAGATAATGGAGCTTGAATCTGGCAAGAACATGAACATGATGATGATGAGCAACGGTGGTGAGAATCAGAATCAGAATTCAAGTTTTGAATATGAACATCAAGACCTGCCTGTGCTTCTCAGGTCTAAGAGGAACAAGACACAGCAGCAGCTTTTTGAGTCCGTCAGCTCCAGAAATTCCCCCATTGAAGTCCATGAGCTAAGAGTGACATACATGGGTGAGAAGACAGTGGTGGTGAGCCTGACGTGCAGCAAGAGGACAGACACAATGGTAAAGTTATGTGAAGCGTTTGAATCATTGAAGCTAAAGATTATCACAGCCAACATCACTTGCTTCTCTGGCACCCTCCTCAAGACCCTCTTCATTCAGGCGGATGAAGAAGAGAAAGATGTTGTACAGATAAAGATCCAAGCAGCTATTGCAGCTCTCAATGATCCTGAAAGCCCAATGAGCATATAA 777 0.4659 MENLPDEFKHYWETHMFYQTEELDSWGLDEAISGYYDSSSPDGNASSSMASKNIVSERNRRKKLNERLFALRAVVPNISKMDKASILKDAIEYIQNLHEQEKSIEAEIMELESGKNMNMMMMSNGGENQNQNSSFEYEHQDLPVLLRSKRNKTQQQLFESVSSRNSPIEVHELRVTYMGEKTVVVSLTCSKRTDTMVKLCEAFESLKLKIITANITCFSGTLLKTLFIQADEEEKDVVQIKIQAAIAALNDPESPMSI 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g0906 258 Gene3D - 44 114 IPR036638 GO:0046983
Alju13g0906 258 SMART finulus 54 103 IPR011598 GO:0046983
Alju13g0906 258 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 44 115 - -
Alju13g0906 258 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 42 244 - -
Alju13g0906 258 MobiDBLite consensus disorder prediction 38 54 - -
Alju13g0906 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 114 IPR036638 GO:0046983
Alju13g0906 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Alju13g0906 258 MobiDBLite consensus disorder prediction 38 57 - -
Alju13g0906 258 Coils Coil 87 114 - -
Alju13g0906 258 Pfam Helix-loop-helix DNA-binding domain 55 97 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g0906 Alju-ChrAlju13 27098008 27104881 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g0906 1 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 58.369 3.29e-79 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju13g0906 HLH 2.8e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju13g0906 13 27098008 27104881 Alju13g0906 13 27098008 27104881 ECH