Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g0863 ATGATACCAACTTATCCCTTTTCTCTTTCTTCTTCTTCTAATTCTATTTCTGCTATGCCTATTATAGATCTTAATATTGTTGATGATCATCAAAGCCATGAGCTAATTTTTAGCCCAACCCACCAACCTTGTTCTTCTTCTCCCTCTTCTCTATCATCATCATCATGCCCTATTCTCTTTAACCCCTCTCATCAGCTTCAGGATCACGCTGGATCTTCTTACTTGGAGTCAAAGAACTTACAAAATGATCATGATGAGGCTTGTGTGAAGAATATTATTGCTTCAAGTGGTGGATCATGGAATGATCCGGATCAAGAAAAGGGTGGTGGTGGTGTTGAGATCAGAAAGAGGGGTCTGAAACTGAAAGTTTGGAAGAGATCATCAACAGCATCAGGATTATCAGAGAAGGAGGAGGATGAAGAAAATAATCATAATCATAATCAAACCGAGGATAATTATGATTCAGTGAAGTGGATGCCTTCAAAGATGAGAATGATGAGGAAGATGATGGTCGCTTCATCAGATCATAATCATAATAATAAGGCTTCTTCCTCCTCCTCCTCCGAAGATCAGAATCAGAATCAGTATCAAAACCAGGAAAGACTATTATTATTGTCTCCTAGAGGAAACGATAATACTAGCAGCAGCAACCATTCTTCAACCCAAAGTAATACTAATAATAATATTACTGTTAGGGTTTGTGCTGATTGCCACACCACCAAGACCCCTCTTTGGAGAAGTGGACCAAGAGGTCCTAAGTCACTATGCAACGCTTGTGGGATTCGACAAAGGAAAGCGAGGCGAGCCATGGCGGCTGCTGCTGCTGCTGCAAATGGTGGGTCGCCGGATCTGAAGGCGGCTGAGAAATCTGTGATGAAAGGGACTTACAAGGTTCACAGCAGCAAAGAGAAGAAGTTGAAATTTGAGTGTGAAACTACTCATCATCATCAGATCATGAAGAAGAAGCACAAGGTTGAAGATGATGATGATCATCAAGACAAGGAAGCTAATAATAATAATTCAAATGGAAGATCATCATCATATTCGTCGTCAATAATAAACAAGTTTGGTAGTTTTGAGGATTTCACAGTAAGTTTGACGAGTAAGAACATGGCGGCTGCATCACAAGTTTTCCCTCAGGATGAGAAGGAGGCTGCAATTCTTCTTATGGCTTTATCTTGCAATGGCCTAGTTCATGGATGA 1203 0.4057 MIPTYPFSLSSSSNSISAMPIIDLNIVDDHQSHELIFSPTHQPCSSSPSSLSSSSCPILFNPSHQLQDHAGSSYLESKNLQNDHDEACVKNIIASSGGSWNDPDQEKGGGGVEIRKRGLKLKVWKRSSTASGLSEKEEDEENNHNHNQTEDNYDSVKWMPSKMRMMRKMMVASSDHNHNNKASSSSSSEDQNQNQYQNQERLLLLSPRGNDNTSSSNHSSTQSNTNNNITVRVCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAAAANGGSPDLKAAEKSVMKGTYKVHSSKEKKLKFECETTHHHQIMKKKHKVEDDDDHQDKEANNNNSNGRSSSYSSSIINKFGSFEDFTVSLTSKNMAAASQVFPQDEKEAAILLMALSCNGLVHG 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g0863 400 FunFam GATA transcription factor 21 228 313 - -
Alju13g0863 400 Pfam GATA zinc finger 234 267 IPR000679 GO:0006355|GO:0043565
Alju13g0863 400 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 230 268 - -
Alju13g0863 400 MobiDBLite consensus disorder prediction 131 151 - -
Alju13g0863 400 MobiDBLite consensus disorder prediction 312 348 - -
Alju13g0863 400 MobiDBLite consensus disorder prediction 94 113 - -
Alju13g0863 400 MobiDBLite consensus disorder prediction 173 227 - -
Alju13g0863 400 CDD ZnF_GATA 233 265 IPR000679 GO:0006355|GO:0043565
Alju13g0863 400 ProSiteProfiles GATA-type zinc finger domain profile. 232 264 IPR000679 GO:0006355|GO:0043565
Alju13g0863 400 MobiDBLite consensus disorder prediction 312 337 - -
Alju13g0863 400 ProSitePatterns GATA-type zinc finger domain. 234 259 IPR000679 GO:0006355|GO:0043565
Alju13g0863 400 SMART GATA_3 228 279 IPR000679 GO:0006355|GO:0043565
Alju13g0863 400 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 8 399 - -
Alju13g0863 400 Gene3D - 232 270 IPR013088 GO:0006355|GO:0008270
Alju13g0863 400 MobiDBLite consensus disorder prediction 125 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g0863 Alju-ChrAlju13 26119115 26120866 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g0863 154 400 C2C2-Gata Transcription Factor Family AT4G26150 37.066 2.49e-34 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Alju13g0863 GATA 5.5e-17 CL0167