Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g0852 ATGGACGCTGTCTTCTCCCTCCCCGAGGCTGCCAGAGCTCATTTTCTACAGTCTATAATGCAGTCCTCAGGCTGCTCTTACATTTGTCTCTGGTCCTATGATTCCCTCTTATCCAATCGTTTGCTGTGTTTGGATGGACTGTTCAATGTGAGAATCAACCAACCGAGCACCTCGTTGGGGAGCAGTGTGGCTCAAAGGCTTTTTGACCAATACAGGAGTTTGCTGTTTGATGTCAATGATAACGACCGTATTCCAGGACTGGCTTTCAAGAACCGCAGTTACCTTGAGCTGCAGCAACCAGATCTTCTGAGACTGGCATGGACACCAATACAGACACAATTTTATCAGGAAGCAAGGATTAAGATTGCAGTCTTCATGGGGTGCAACAATGGAGAAATGGAACTTGGCTTCCCAAACATGTCTCAAGATGATATTCAAACAGCACTGAGGAATTGGTTCCCAGATGAATTTTCAAGATCACAGCCAAACATGGATCAGAGTCAGAGTCAGAACCAGAACCCACCATCATCATCTTCATCATCATTAAGATCACTGTCATTATCTGCAGGAAGTCCTGAATACTCATCCCTTCTCTTCAACATTCCTGCTGCATCTTCCCCTCATTTTCCTCCTCCTCCTCCTCCTCCGGCTCAAGTCACAGCACAGAGTCCATTTCCCACACTAGACACCGAAAATGAAGCCATCATGAGAGCAATCCTTCATGTCCTTTCCACTACTACTACTTCTACTTCATCACCTTCTTCTCATCCTCAGAATTTGCCTAATACTAGTAATTATATGGTTCATCCTGAGGCTAGTGCCTTCAACAGGTACAGCCCCACCGGGATTTTCCCCCCGCCGAGGCCGCCACCATCCCAAATGGGACCGGATCATCAATTGCGGAGGCAAAGTTTGTTCAAGAGGTCATTGACGTTCTTTAGAGGCTTGAATTTCATGAGAATGAGAGAACGGACTCAAACAAGTCGCCCCAGTAGTACACAGCTTCATCACATGATCTCAGAAAGAAGAAGGCGGGAAAAGCTCAACGAGAACTTTCAGAATCTTAGATCACTTCTTCCTCCAGGAACCAAGAAGGACAAAGCTTCGATACTTACAACAGCAAAGGAAGTACTGAGATCATTAATGGCGGAGATAGAAAAGCTTAGAGAGAGAAACAAGCGGCTGGAGGGAGCAACAATAACGTCTTCATCAATGGCGGCGGCTCCGGCGGCTGTGAAAGAAACAAGTGGTGACGATGATCATGAAATAAAAAATGAAAGGTTAAATGTGAGAATTTCATCTTCAGGCGAGCAACCACCAGAATCAAGCTCGTCCTCAGAAGAAGGGAGAATGATAGATTTGGAAGTGACAGTGAGGGGACAAAATTCTCAATTGGATATTCTGATTCGATTACTGGGATTTCTGAAACAAGATCAAAATCTAAGCTTGATTTCCATGGAAGCTAATACTCATATAGCTCATGCCACTTCCTTCAATCGAATCTCCGTAAGGCTGAGGGTTGAGGGAGGTGAATGGGACGAATCTGCCTTCCAGGAAGCAGTGAGAAGAGTTGTTGCTGACCTGGCACAATGA 1593 0.4545 MDAVFSLPEAARAHFLQSIMQSSGCSYICLWSYDSLLSNRLLCLDGLFNVRINQPSTSLGSSVAQRLFDQYRSLLFDVNDNDRIPGLAFKNRSYLELQQPDLLRLAWTPIQTQFYQEARIKIAVFMGCNNGEMELGFPNMSQDDIQTALRNWFPDEFSRSQPNMDQSQSQNQNPPSSSSSSLRSLSLSAGSPEYSSLLFNIPAASSPHFPPPPPPPAQVTAQSPFPTLDTENEAIMRAILHVLSTTTTSTSSPSSHPQNLPNTSNYMVHPEASAFNRYSPTGIFPPPRPPPSQMGPDHQLRRQSLFKRSLTFFRGLNFMRMRERTQTSRPSSTQLHHMISERRRREKLNENFQNLRSLLPPGTKKDKASILTTAKEVLRSLMAEIEKLRERNKRLEGATITSSSMAAAPAAVKETSGDDDHEIKNERLNVRISSSGEQPPESSSSSEEGRMIDLEVTVRGQNSQLDILIRLLGFLKQDQNLSLISMEANTHIAHATSFNRISVRLRVEGGEWDESAFQEAVRRVVADLAQ 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g0852 530 Coils Coil 338 358 - -
Alju13g0852 530 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 332 381 IPR011598 GO:0046983
Alju13g0852 530 Pfam Helix-loop-helix DNA-binding domain 336 381 IPR011598 GO:0046983
Alju13g0852 530 MobiDBLite consensus disorder prediction 429 449 - -
Alju13g0852 530 CDD bHLH_AtbHLH_like 337 389 IPR045239 -
Alju13g0852 530 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 332 399 IPR036638 GO:0046983
Alju13g0852 530 MobiDBLite consensus disorder prediction 396 449 - -
Alju13g0852 530 MobiDBLite consensus disorder prediction 156 187 - -
Alju13g0852 530 Coils Coil 371 398 - -
Alju13g0852 530 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 108 527 IPR044658 -
Alju13g0852 530 SMART finulus 338 387 IPR011598 GO:0046983
Alju13g0852 530 Gene3D - 331 404 IPR036638 GO:0046983
Alju13g0852 530 MobiDBLite consensus disorder prediction 414 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g0852 Alju-ChrAlju13 25975412 25980510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g0852 1 530 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 40.767 3.04e-90 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju13g0852 HLH 7.2e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju13g0852 13 25975412 25980510 Alju13g0852 13 25975412 25980510 ECH