Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g0849 ATGCGATCTTTTGGGCTCGGCTTGTTCCGCCCTACGGCTTCTATTCGCCTTCGGCTGCAGCGCCCTTGGACTTCGGGCTCCACCGTCTTGTTAGATATTCTTCTCCTTCGACTTCGAGCTAGGTCGCATAGCAGAACGCAGACCTCCAGTACCACCTCCGACTCCGACCTTCTCCTTCATGAACCGTCGTGCAATGAGTGCAATCTACCTGGCACCAGTGAAAATCATTCTGCTTCTCAAGTGCTAAAAAATCATGATAATGGCATCGATAAATTGCGGCAAGAAAGCCAGGAAAAGGAACCTGAGAACTTGCAATTTTCTGGTACTGATCTTTTGAATCTCAAGCGTCCTGTATCCCATAAGGAAAAACAGGTTCATGAGAGTTCTGATGGTAGGGAATTTATAATGGGAGTAGAGGAAGATGTAGGCTCTACTGGAAGGCAGGATATGATGATTTGTGAAAGAGAAAGTGTTGAGGCCTTGTCCATGGGAACTAATGATTTGAATAAGGAACAGGAGAAAATAGAAGAGTTAAATCAGATAGTGAAAGGAACTGAAAACCTTATTGGCAATGGCTCAATTCCTTTGAACTTGGGATTAGGTGAAAACCGGAACGGAAGCAATGAAGCTGACTTGATGGATTACCGAGTGGATTATGTTGAATTTAGAGGAACTGATGTCAACACATCTGGAACTGAAAGCAAGTTATATATAGAAGGAGAATTTGCAAATATCTCTGAAGGCTTTGATGCATCTTTAATTGCTAACATCTCAACATCTGAAACAAAGGAAACCTCTATAGCCGAAATTAGCACATCAAGTATAAAACACAAGAGACAACAAAAAGAAATGGAATTGGTGAAACCACCTTGTGCTGCAATGGATTCTCTTCCTATTATTGAAGAAGGTGAGTTTGAGAAGGAAGAACATGTTCAAAAGGTTCATCTAGCAACACACCTTTCTCAAGAAGATGGTATCAAATACAGTGAACCGTTTAATTGGAGTTTTGAGATCGGGAGACTACAAAAGGAAATGGAATTAGAATTGGTGAAACCTGTTTCTGCTGCAGTTGTTTCTCTTCCTTCTACTGAAAAGGGTAAGTTTGAGAAGGAGGAACAACATGGTCAAAAGGTATGTGAGGCTATACAATTTTCTGTAGATCAGAGTACGAATAATGAAGAATCAAATTCAAGTGTAAAGCTTGATAAACAAAAAAGGGAAATGGACACGGTAAAACCAGTTGGTGCTGCAATGGTGTGTCTTCCTACTACCAAAGAGGGTGAGTTTGAGAAGGAAGAACAAAGTGGTCAAAAGGCTTCTGAAGCAATGCGTGTTTCTGTAGGTCTGGCTATGAACAGTGAAGCACTGATTTCAAGTATAAAGCCCAATAGACGACAAAACGAAATGGAATTGGTGAAACCTGTCTCTGCCGCAATTATTTCTCTTCCTACTACTGAAGAGGATGAATTTAAGAAGGAAGATCAACATGGGCAAAGGGTTTCTGATGCAATGCATTTTTCTATAGATCAGGATATGAATAATGAAGCATCAAATTCACATATAAAGCATGAGAAACAACAAAAGGAAATTGACTCAGTGAAATCAGGCTGTACTGCAATTGTTTCTCTTCCTACCACCAAAGAGGGTGAGTTTGAGAAGGAAGAACGACATGGGCAAAAGGTTCCTGAAGCAATGCACATTTCTGTAGATCAGGGTATGGATAGTGAAGCATTGATTTTAAAAACAAAGCCTGAAAGACAACAAAGTGAAATGGAATTGGCGAAACCTGCCTGTCCTGAAATTGTTTCTCTTCCTGGTTTTGAAGAGGATGAACTTGAGAAGGAAGAATATAATGGTAGTAATGGTTCCAAACCCCCCAAGACATATGTAAGGAAGAGTAAGAAGAGGGATTTGGGCCACTTGGACCTATCAGGTAGAAAGGTCCCTGAAGCAATGCACTTATCTGTAAATCAGGGTACAAATGACGAAATATTGAATTTTAGTGAATATAGTGAAGGGGTGTCATTCATGGACATTGATATTATGGATGCTAAACATGTAATACAACAGGAAGAAGAGCTGCTGGAAAAAATAACTCACGCAAATGATGCAACATTTTCCAATCATCCAGATAAGGAAGAAGACATTGAAGAGGGAGAACTTTCAGGTGACTTTAGAATGGATGAGGGTTCAGTTGATGCATCTTCTGCAGATTCTTTGATGATAGAACAGAGGGAACATGATGTACAAAAGCCCAAACGTGTTATTGAAAATATAGTATTTCCTTTTAATAAACCGAAAGAAGAAAAAGAAAAAAAATTCAAATCAACTCAAGATGCCTGTAACAGTGCACTACTGGAACCCAGGAAAATTGATAAAAATGGGTTTCCAAATGGAGTTGACTTTGGAATCTCTCGGGAAATTATTGATTATGGAGATATAGTGGAGCATGATTCTGTATTGGTGACTGGAAAAAGTAAAGACAGTGGAATTAAAGGGGTTGTTGGCTTGCCAGCAACTTTGCCTAACAAAAGAGTCTTGCCCAAAGTTGTCTTGGAAGAAGAAGTCACTGAAGATCATCAAAACACATCTGCGGTAAAGCTTGTAAGGTTTTGAAAATTGTGCTGGTTTTGCTTTTTGATATTTGGTTGTATGACCAATGCGGCTGATCATTTGCAACAGAAAGCTGGCGTCAGTTGTAAGAAAAAGCGTGGTCCTGTTACTGAGGAAAAGAAGGCGAAAAAGAAGGAAAAGAAAAGAAAGCAGCGGGCAGAAAAGAACAGAAAACTTGGTGTTAAAAGGTTGAAATTGCAGCCAGTACAGAAACCAAAAACTATCACACATTGCCGCCATTATCTGAAGGGAAGATGCCATGAGGGCGACAAGTGCAAGTTCTCACATGATATTGTGCCTCTGACAAAATCAAAGCCATGCTGTCATTTTGCCCGTCACTCTTGCATGAAAGGTGATGACTGTCCATTTGATCATGAACTCTCCAAGTATCCTTGTAGCAATTTTGCGACTAAAGGTTCTTGCAGCAGAGGGAATGCTTGCATGTTTTCACACCAGATGCCAACCAAGCAAGATGTTGCAACATCTTCAAATGATAGCAAAGCTGAGTTGAAGCCTAGACTATTAGGAAATACACAATTGAGTAACCCACCTAACATCAGCAGCAGCAGTGCTACTCAGCAAAAACAGATCTCTGATTCAAAAGGAATTCAATCTCACTTCAATTCAGAAAAAGAAGCGGTGGACACTATAAAGAAACCACAGACATTGGTACCTAGGGGAATTAGTTTCATCAATGTTTCAAAATCATCATCTCCAAAACAAGGGGTGGTAACTCCAAACAAGGAAAATTCTGTTCAAATTGGGACCCTTACTGGCCGAAGTGCATCATCTGGCACAGCTTTAAACTCGATGAATCCTGAGAAAACGCCAGTGGTGGCACCTAAAGGAATTAACTTCCTTTCATTTGGAAAAGGTCGTGTTTCCAGTTTCAAAAGTGCTGTCTGCTCCTTTTTGAATAAGGAAAATGGCATCAAGTTGTCTCACAAAGAAAGTTTAGGTACACCTGAACAAGCATTTCTACAGAAGGATGATTGCACTAAAGTTGGCAGTGGGACAAAACAAATTGTACTGCAGACTACTGCGTGCTCAAATGAGATTTTAAAGCAAAATCAATATATAGCAGAGAAAATGGATTTGGGATTTCAAGGAAAAGCTTCAATCAATCATTATAGTAATGATGTACAATCTAGCTCAACCTCTCATCAGGATCACAGTCTTAGTAGATCAATGCAAGAGGAAGTGAAGACATATACTCCTCAGACTTCAACTCTGACCTCGCCTTTTCTTTTAACTTCTCCATTTGTTTCAGGTCAATCTTCAGAACGCCAAGCATCTGGTCATTATAAGAACGTATTTAACTCAGCCCAAAGGGCGGCACTGTTATCAACCCTAACATTTGCAGCAGAGCACGAGTCCAATATTAAGCTAAAGTTTCCCGTTGGTGCATCAGCTTTTAAATCAGAGATGAACAAGGATGTATAG 4056 0.4001 MRSFGLGLFRPTASIRLRLQRPWTSGSTVLLDILLLRLRARSHSRTQTSSTTSDSDLLLHEPSCNECNLPGTSENHSASQVLKNHDNGIDKLRQESQEKEPENLQFSGTDLLNLKRPVSHKEKQVHESSDGREFIMGVEEDVGSTGRQDMMICERESVEALSMGTNDLNKEQEKIEELNQIVKGTENLIGNGSIPLNLGLGENRNGSNEADLMDYRVDYVEFRGTDVNTSGTESKLYIEGEFANISEGFDASLIANISTSETKETSIAEISTSSIKHKRQQKEMELVKPPCAAMDSLPIIEEGEFEKEEHVQKVHLATHLSQEDGIKYSEPFNWSFEIGRLQKEMELELVKPVSAAVVSLPSTEKGKFEKEEQHGQKVCEAIQFSVDQSTNNEESNSSVKLDKQKREMDTVKPVGAAMVCLPTTKEGEFEKEEQSGQKASEAMRVSVGLAMNSEALISSIKPNRRQNEMELVKPVSAAIISLPTTEEDEFKKEDQHGQRVSDAMHFSIDQDMNNEASNSHIKHEKQQKEIDSVKSGCTAIVSLPTTKEGEFEKEERHGQKVPEAMHISVDQGMDSEALILKTKPERQQSEMELAKPACPEIVSLPGFEEDELEKEEYNGSNGSKPPKTYVRKSKKRDLGHLDLSGRKVPEAMHLSVNQGTNDEILNFSEYSEGVSFMDIDIMDAKHVIQQEEELLEKITHANDATFSNHPDKEEDIEEGELSGDFRMDEGSVDASSADSLMIEQREHDVQKPKRVIENIVFPFNKPKEEKEKKFKSTQDACNSALLEPRKIDKNGFPNGVDFGISREIIDYGDIVEHDSVLVTGKSKDSGIKGVVGLPATLPNKRVLPKVVLEEEVTEDHQNTSAVKLVRFXKLCWFCFLIFGCMTNAADHLQQKAGVSCKKKRGPVTEEKKAKKKEKKRKQRAEKNRKLGVKRLKLQPVQKPKTITHCRHYLKGRCHEGDKCKFSHDIVPLTKSKPCCHFARHSCMKGDDCPFDHELSKYPCSNFATKGSCSRGNACMFSHQMPTKQDVATSSNDSKAELKPRLLGNTQLSNPPNISSSSATQQKQISDSKGIQSHFNSEKEAVDTIKKPQTLVPRGISFINVSKSSSPKQGVVTPNKENSVQIGTLTGRSASSGTALNSMNPEKTPVVAPKGINFLSFGKGRVSSFKSAVCSFLNKENGIKLSHKESLGTPEQAFLQKDDCTKVGSGTKQIVLQTTACSNEILKQNQYIAEKMDLGFQGKASINHYSNDVQSSSTSHQDHSLSRSMQEEVKTYTPQTSTLTSPFLLTSPFVSGQSSERQASGHYKNVFNSAQRAALLSTLTFAAEHESNIKLKFPVGASAFKSEMNKDV 1351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g0849 1351 SMART c3hfinal6 944 969 IPR000571 GO:0046872
Alju13g0849 1351 SMART c3hfinal6 1000 1024 IPR000571 GO:0046872
Alju13g0849 1351 SMART c3hfinal6 972 998 IPR000571 GO:0046872
Alju13g0849 1351 Coils Coil 161 188 - -
Alju13g0849 1351 Pfam CCCH-type zinc finger 948 968 IPR041367 -
Alju13g0849 1351 Gene3D - 894 973 - -
Alju13g0849 1351 MobiDBLite consensus disorder prediction 62 111 - -
Alju13g0849 1351 SUPERFAMILY CCCH zinc finger 943 968 IPR036855 GO:0046872
Alju13g0849 1351 ProSiteProfiles Zinc finger C3H1-type profile. 1002 1025 IPR000571 GO:0046872
Alju13g0849 1351 Coils Coil 907 927 - -
Alju13g0849 1351 MobiDBLite consensus disorder prediction 86 100 - -
Alju13g0849 1351 SUPERFAMILY CCCH zinc finger 1001 1027 IPR036855 GO:0046872
Alju13g0849 1351 ProSiteProfiles Zinc finger C3H1-type profile. 972 999 IPR000571 GO:0046872
Alju13g0849 1351 MobiDBLite consensus disorder prediction 66 84 - -
Alju13g0849 1351 ProSiteProfiles Zinc finger C3H1-type profile. 943 970 IPR000571 GO:0046872
Alju13g0849 1351 MobiDBLite consensus disorder prediction 1029 1090 - -
Alju13g0849 1351 MobiDBLite consensus disorder prediction 1250 1276 - -
Alju13g0849 1351 Gene3D - 974 1038 - -
Alju13g0849 1351 MobiDBLite consensus disorder prediction 1046 1075 - -
Alju13g0849 1351 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 498 1341 IPR045124 GO:0003723|GO:0045892
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju13g0849 zf-CCCH_4 1e-06 CL0537