Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g0848 ATGGTGGGTGCTTACGGTGGATCCGGCGGGATCAGCGGTGGTGGCAGGTCAGAATCCATTTCTATAGTTCTATTGAAGGAAGCTATGGCACGAGTAGAACGTGTAAAATCAGAGCAAGTAATGGTGTCCGATGAGGACATGAGTCGTTCGAGTTCCGGTGGGTACTGCGATGTTGAAGGCGAGCCAAACGAAGGCGTTTGCAGTGACGATTCGGGAAGGAAGAGCTCACAAGTGACGGATGAGGAGCTTACTGAACCGGTTCCACCGGTTCACGTCAAGCTTGAGGAACCGGGTGGAGCGGTGGATGAGGTTGATGGCGGTGCCGGAGTTAATCGGTCGTCTTATTCATCGCCAATCTTCTTCCCGAAACCAATGGAAGGGTTGCACGAGGTGGGCCCGCCGCCGTTCCTCAAGAAGACGTTCGAGATGGTTGAGGACCCGGTAACCAACCCGATTGTGTCCTGGAGTGAAGCTCGTGATAGCTTCATCGTTTGGGATTCCCATGAATTTTCTAAAATTCTTCTCCCTAAGTACTTCAAACACAGCAATTTCTCCAGCTTCATTCGCCAGCTTAACACATACGGATTTCGGAAGGTTGATTCAGACCGTTGGGAATTTGCGAACGAAGGATTTCAGGGTGGAAAGAAGCATTTGCTGAAGAACATTAGGAGAAGAAGCAAGTATAGCAAGCTGCAACAAGGAGGAGCATTGACTTGTTCCATGAAACCTGGGCTGGAGGCTGAAGTTGAGAGACTGAAGAAGGATCAGAACATAATGAAAGTGGAAATTCTGAAGCTGAGACAGCAACAAGAGACTACACAGGTTCAACTTGTAAATGTTCAAGAACGTGTTCGGTCTGCCGAGTTGAAGCAGTGCCAGATGATCTATTTCCTGACCAAAATGGCCAGAAGACCAACTTTGGTTCAGCAGTTAATCCAGAAGGTTAAGCGAAAAAGAGAACTCGGTGGCAGCGAGATTAGTAAGAGACCCAGATTGCTTGGAACCCATTGCCCAGTGAACTCCCCTAAGGCCATAGACACCAATTCTGATGTTGATTGTAGACAAGGTAATTTGGCTTCATTGCAATCGGAGCTCAATGGACTCTTGTCTGAAACAGTGAACAATAGCAGAATGCAGCCTGCAGCCCCTTCTCCTCCTCTGAGAGATGATGAACTGTGCAGTTCAGGATTAAGGACCAATAATAATGCTTCAAGGGCAAGTGCGGCGGCTTGCTCTATGATGTCAGAAAAACTGATGGAAGAGAACTCTGTTGTTGAAGAAGGGCTTGATGTGAATGATTCAAATATCTATCTTGAATTGGAGGATTTGATTAGCAAATCAACTGAGTGGGTTGGATCTGCAAGTGGATTGGTGGGGCAAACTGGTTGTATCTAA 1395 0.4738 MVGAYGGSGGISGGGRSESISIVLLKEAMARVERVKSEQVMVSDEDMSRSSSGGYCDVEGEPNEGVCSDDSGRKSSQVTDEELTEPVPPVHVKLEEPGGAVDEVDGGAGVNRSSYSSPIFFPKPMEGLHEVGPPPFLKKTFEMVEDPVTNPIVSWSEARDSFIVWDSHEFSKILLPKYFKHSNFSSFIRQLNTYGFRKVDSDRWEFANEGFQGGKKHLLKNIRRRSKYSKLQQGGALTCSMKPGLEAEVERLKKDQNIMKVEILKLRQQQETTQVQLVNVQERVRSAELKQCQMIYFLTKMARRPTLVQQLIQKVKRKRELGGSEISKRPRLLGTHCPVNSPKAIDTNSDVDCRQGNLASLQSELNGLLSETVNNSRMQPAAPSPPLRDDELCSSGLRTNNNASRASAAACSMMSEKLMEENSVVEEGLDVNDSNIYLELEDLISKSTEWVGSASGLVGQTGCI 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g0848 464 MobiDBLite consensus disorder prediction 39 108 - -
Alju13g0848 464 SUPERFAMILY "Winged helix" DNA-binding domain 132 225 IPR036390 -
Alju13g0848 464 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 122 363 IPR027725 -
Alju13g0848 464 Coils Coil 249 269 - -
Alju13g0848 464 Gene3D - 129 226 IPR036388 -
Alju13g0848 464 PRINTS Heat shock factor (HSF) domain signature 187 199 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju13g0848 464 PRINTS Heat shock factor (HSF) domain signature 174 186 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju13g0848 464 PRINTS Heat shock factor (HSF) domain signature 136 159 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju13g0848 464 FunFam Heat shock transcription factor 1 129 226 - -
Alju13g0848 464 Pfam HSF-type DNA-binding 136 225 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju13g0848 464 ProSitePatterns HSF-type DNA-binding domain signature. 175 199 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju13g0848 464 SMART hsfneu3 132 225 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g0848 Alju-ChrAlju13 25915761 25917623 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g0848 122 335 HSF AT2G26150 54.338 5.62e-83 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Alju13g0848 HSF_DNA-bind 5.8e-32 CL0123