Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g0838 ATGAGCATCGCCGCCCGGCCCCCAAAAAAACGGGGCAAAAAAAACTATGCGAAGAGGCAGCTGTCTTTTTGTCCTCCTTTTTCTTCGATCAACTTGCTATTATCATCGTCAAAAGTCATGGAGGCAACAGCACCTGAGGGTTCGCAGTTTGATGCTCGTCAGTTTGATGCCAAGATGAATGAATTACTTACAGCTGATGGGCAGGATTTCTTTGCATCTTATGATGAGGTTTATGATAGTTTTGATGCTATGGGCTTGCAGGAGAATCTCCTGAGAGGCATTTATGCATACGGTTTTGAGAAGCCATCAGCCATTCAGCAAAGGGGAATTGTTCCCTTCTGCAAGGGACTTGATGTTATTCAACAAGCTCAATCTGGAACTGGGAAGACAGCAACATTTTGCTCTGGAATTTTGCAGCAACTTGAATATGGTTTGATGGAATGCCAGGCTTTGGTCCTAGCACCAACTCGAGAGCTTGCTCAGCAAATTGAGAAGGTTATGCGAGCACTGGGGGATTATCTTGGTGTAAAGGTGCATGCATGTGTGGGAGGAACTAGTGTCCGTGAAGACCAACGCATTCTCTCTAGTGGTGTTCATGTTGTTGTTGGTACTCCTGGCCGTGTGTTTGATATGCTGCGCAGGCAGTCACTTCGGCCAGATTACATCAAGATGTTTGTATTGGATGAGGCTGATGAGATGCTCTCCAGAGGTTTTAAAGACCAGATTTACGATATATTCCAGTTGCTGCCAGGCAAAATTCAAGTGGGAGTGTTCTCTGCTACTATGCCTCCAGAGGCCCTGGAGATCACAAGGAAATTTATGAACAAACCTGTTAGGATCCTTGTGAAGCGTGATGAGCTCACCTTGGAGGGTATAAAGCAGTTTCATGTCAACGTAGAAAGAGAGGAATGGAAGCTGGACACGCTATGTGATCTTTATGAAACATTAGCCATCACTCAGAGTGTCATTTTTGTGAACACCCGAAGGAAGGTTGATTGGCTTACTGACAAGATGCGAAGCCGGGACCACACGGTGTCAGCAACCCATGGAGATATGGACCAGAATACTAGAGACATAATCATGCGTGAGTTCCGATCCGGTTCTTCCCGTGTTCTGATCACAACAGATCTTTTGGCGCGTGGTATTGATGTCCAGCAAGTGTCTCTAGTTATTAACTATGATCTCCCAACACAGCCTGAGAACTACCTCCATCGTATTGGTCGTAGTGGTAGGTTTGGGAGAAAAGGTGTAGCCATCAACTTTGTGACAAAGGATGATGAAAGAATGCTGTTTGACATCCAGAAGTTTTACAATGTGGTAATAGAGGAGCTGCCATCAAATGTTGCTGAACTCCTCTAA 1359 0.4533 MSIAARPPKKRGKKNYAKRQLSFCPPFSSINLLLSSSKVMEATAPEGSQFDARQFDAKMNELLTADGQDFFASYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLEYGLMECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEREEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPSNVAELL 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g0838 452 Pfam Helicase conserved C-terminal domain 305 413 IPR001650 -
Alju13g0838 452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 433 IPR027417 -
Alju13g0838 452 CDD SF2_C_DEAD 292 422 - -
Alju13g0838 452 SMART helicmild6 332 413 IPR001650 -
Alju13g0838 452 PANTHER RNA HELICASE 56 436 - -
Alju13g0838 452 FunFam Eukaryotic initiation factor 4A-III 287 452 - -
Alju13g0838 452 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 226 234 IPR000629 -
Alju13g0838 452 CDD DEADc_EIF4A 83 281 - -
Alju13g0838 452 SMART ultradead3 98 295 IPR014001 -
Alju13g0838 452 Gene3D - 288 452 IPR027417 -
Alju13g0838 452 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 291 452 IPR001650 -
Alju13g0838 452 Gene3D - 69 287 IPR027417 -
Alju13g0838 452 FunFam Eukaryotic initiation factor 4A-II 67 286 - -
Alju13g0838 452 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 79 107 IPR014014 GO:0003724
Alju13g0838 452 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 110 280 IPR014001 -
Alju13g0838 452 Pfam DEAD/DEAH box helicase 104 265 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g0838 Alju-ChrAlju13 25833459 25836517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g0838 40 452 Eukaryotic Initiation Factors Gene Family AT1G72730 87.198 0.0 755