Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g0766 ATGGAAGATCCCAGGCTTGGCAAGCCACCGGCTTCAGCTTCAACCAGGGACGGCGCCGTCATGTTCCTTTTTGCTTCTGTAACTGCACCACCAGATCAAATCCCGAAGGGATTCACTCTGTTCGCCAAGCTGGATAGGCACAGAGGAGACCGCTATGGCAACAACAACCACGATTCTCACCCATATCGTCACTCCAGAGCTCCGTCCCGCTTCTCCGACGCTCCCTTCAACAACCGCGGCGGTGGAGCCTCTCACCACCGTCAGTTTGACAGCCCACCCCGTCGCTCCCCTGGAAGAGGTCCAGGGTTCCGATCACCGGGTTTTGGCGGCAGCGATGGGTTTAGGCCAGTGAGTGGTGAGGGTACTGGAGGGTTTGGGTTTAACGGTCGTCAGGGGCAGCCACTGTCTGGTCAGAAACGAGGGCTACCCTTCTCTGGACGTGGAGGTTCGCCGGACCGTTTTGGTGGGGAAAGTTTTGCCAAACTTTTTGTTGGATCTGTTCCACGGACAGCAACTGAAGAAGATATTCGGCCTTTGTTCGAGCAACATGGAAATGTGGTTGAGGTTGCCCTGATAAAGGATAGAAAGACAGGACAGCAGCAAGGTTGTTGTTTCATCAAGTATGCTTCCCCTGATGAGGCTGATCAGGCAATTAAAGCATTGCACAATCAACATATTCTTCCTGGAGGTCTTGGTCCAATCCAAGTGAGATATGCTGATGGTGAACGAGAACGCCTTGGTGCAGTTGAATACAAGTTATTCGTGGGCTCTCTGAACAAACAGGCTTCTGTAAAGGAAGTTGAGGAAATTTTCTCAAAATATGGACGGGTTGAAGATGTTTATCTGATGCGTGATGAGAAGAAGCAAAGCCGTGGATGTGGTTTTGTTAAATACTCTCACAGAGATATGGCTTTGGCAGCTATAAATGCGCTTAATGGAATTTATACAATGAGAGGTTGTGATCAACCTTTAACTGTACGTTTTGCTGATCCTAAGAGACCTCGACAAGGGGATTCAAGGGGTCCTGCATTTGGTTCGAGATTTGAAGTACCAGGTCCTAGACATCCAGCATTTGGTCCAAGATTTGAAGCACCTAGTTCTAGACCTCCATTCGTTGTTAATGATCCCATGGGTGATCAAGCCTCTGCTCCCAATGCTTGGCGTCCTATGCATCCTTCAAATATGGGGCCATCATCTAACACTGGTCTGCATAACCTGAGGCCGCCATTGCTTCCAAGATCTGGTGACATGGACATGGCATTGGCTATGAATGCAGGTGGTCCTGGGAATGGCTTTGGAGGCCCTTCAAATGGTCCGTTTCAAAGACAGAATTTCAATCAAAACATTCCTCATATTCCACCAGCCAGCCAACAGATGTCACCACTGCAGAAGCCTATTCAATCACCTCAGGACAAGCCTTCTTCCTTCCAGATGTACCCTCCAGCCCTGATCTCCTACTCACAAGCACCACCTTCTCTTGCATCATTTAGGCAGGTTGGCCAACAGCAACTTCCTTCATCTGCTGGTCCTCTTCCGTCACATCAGATGCATGGTCTAAATGGACACTTTCCAGTTTCTCAGCCTCAAGCTCAGCAGGTTACTTCATCTGCTGGTGCAGCGGCCCAGGGCCATGCCCCTCTTGATACCAGCTTGCGAATAAATACAACATTGACCACCACAAATCAACAGCAACTATCCACCTCCATGCAGCAGCAGCCGCTTCAGCCTCAGCAGTCTCCATCCCAGTTGGCGCAAATGTTGTCACAACAAACTCAGACTTTGCAAGCGAGCTTTCATTCATCTCAGAAGGCTTTCTCCCAGCTTCAACAACAACTACAGATGATGCAACCGTGTAGTCAAGGTTTAACGTTGCACCAAAATGCAGAATCTATGAAAAAACAGTCTCAGTGGACGGCTCCAACTGCAAATGTGCCTTCTGCTGTACCTCCAATAGGCCAGAACATAACCCCTGCAAAATGTGATTGGACAGAGCATGTATCTCCAGAGGGCTTCAAGTATTATCACAATAGTGTTACTGGGGAAAGTCGGTGGGAGAAACCTGAAGAGCTGACATTATCTGAACAGCAAAAGCCATCTGTTCAGCAACCTCAAAGTCAGTCACAGCCTCCAATATCACCTCAACAAGTTCCTCAAATGCAACAATTACAGCCTCAGGGCCAGCTCCAAGGACAGGTGCTCCAGCAACAGTACCAGGCCTATGCAGTTGCAGGTCATCAAAATGCCCAGGGAATGTATACTATGCAAGAGTGGATGTGGAAAGATAAGCCAGCAGGGATTTGA 2301 0.4898 MEDPRLGKPPASASTRDGAVMFLFASVTAPPDQIPKGFTLFAKLDRHRGDRYGNNNHDSHPYRHSRAPSRFSDAPFNNRGGGASHHRQFDSPPRRSPGRGPGFRSPGFGGSDGFRPVSGEGTGGFGFNGRQGQPLSGQKRGLPFSGRGGSPDRFGGESFAKLFVGSVPRTATEEDIRPLFEQHGNVVEVALIKDRKTGQQQGCCFIKYASPDEADQAIKALHNQHILPGGLGPIQVRYADGERERLGAVEYKLFVGSLNKQASVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRQGDSRGPAFGSRFEVPGPRHPAFGPRFEAPSSRPPFVVNDPMGDQASAPNAWRPMHPSNMGPSSNTGLHNLRPPLLPRSGDMDMALAMNAGGPGNGFGGPSNGPFQRQNFNQNIPHIPPASQQMSPLQKPIQSPQDKPSSFQMYPPALISYSQAPPSLASFRQVGQQQLPSSAGPLPSHQMHGLNGHFPVSQPQAQQVTSSAGAAAQGHAPLDTSLRINTTLTTTNQQQLSTSMQQQPLQPQQSPSQLAQMLSQQTQTLQASFHSSQKAFSQLQQQLQMMQPCSQGLTLHQNAESMKKQSQWTAPTANVPSAVPPIGQNITPAKCDWTEHVSPEGFKYYHNSVTGESRWEKPEELTLSEQQKPSVQQPQSQSQPPISPQQVPQMQQLQPQGQLQGQVLQQQYQAYAVAGHQNAQGMYTMQEWMWKDKPAGI 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g0766 766 MobiDBLite consensus disorder prediction 520 539 - -
Alju13g0766 766 MobiDBLite consensus disorder prediction 627 650 - -
Alju13g0766 766 SMART rrm1_1 252 327 IPR000504 GO:0003723
Alju13g0766 766 SMART rrm1_1 161 237 IPR000504 GO:0003723
Alju13g0766 766 MobiDBLite consensus disorder prediction 561 588 - -
Alju13g0766 766 ProSitePatterns WW/rsp5/WWP domain signature. 662 687 IPR001202 GO:0005515
Alju13g0766 766 MobiDBLite consensus disorder prediction 627 655 - -
Alju13g0766 766 PANTHER RNA BINDING PROTEIN 79 617 - -
Alju13g0766 766 MobiDBLite consensus disorder prediction 428 474 - -
Alju13g0766 766 MobiDBLite consensus disorder prediction 520 544 - -
Alju13g0766 766 Pfam WW domain 661 687 IPR001202 GO:0005515
Alju13g0766 766 MobiDBLite consensus disorder prediction 48 151 - -
Alju13g0766 766 SUPERFAMILY RNA-binding domain, RBD 147 245 IPR035979 GO:0003676
Alju13g0766 766 Gene3D - 156 248 IPR012677 -
Alju13g0766 766 Gene3D - 249 340 IPR012677 -
Alju13g0766 766 MobiDBLite consensus disorder prediction 684 723 - -
Alju13g0766 766 SMART ww_5 657 689 IPR001202 GO:0005515
Alju13g0766 766 MobiDBLite consensus disorder prediction 436 474 - -
Alju13g0766 766 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 241 IPR000504 GO:0003723
Alju13g0766 766 MobiDBLite consensus disorder prediction 48 67 - -
Alju13g0766 766 FunFam flowering time control protein FCA isoform X2 155 246 - -
Alju13g0766 766 FunFam Flowering time control protein FCA 247 337 - -
Alju13g0766 766 SUPERFAMILY RNA-binding domain, RBD 251 354 IPR035979 GO:0003676
Alju13g0766 766 ProSiteProfiles WW/rsp5/WWP domain profile. 656 689 IPR001202 GO:0005515
Alju13g0766 766 MobiDBLite consensus disorder prediction 327 357 - -
Alju13g0766 766 MobiDBLite consensus disorder prediction 693 723 - -
Alju13g0766 766 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 251 331 IPR000504 GO:0003723
Alju13g0766 766 Gene3D - 656 701 - -
Alju13g0766 766 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 253 319 IPR000504 GO:0003723
Alju13g0766 766 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 225 IPR000504 GO:0003723
Alju13g0766 766 SUPERFAMILY WW domain 661 692 IPR036020 GO:0005515
Alju13g0766 766 CDD WW 659 689 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g0766 Alju-ChrAlju13 24916353 24929501 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g0766 158 337 Eukaryotic Initiation Factors Gene Family AT1G71770 26.425 9.29e-16 79.7